Variant report

Variant	rs67153514
Chromosome Location	chr8:125284001-125284002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125283455..125287567-chr8:125381773..125385340,3	MCF-7	breast:
2	chr8:125283962..125286170-chr8:125287924..125291020,4	MCF-7	breast:
3	chr8:125258129..125260887-chr8:125283574..125285765,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FER1L6-1	chr8:125283924-125284051	ENSG00000253227

Variant related genes	Relation type
ENSG00000164983	Chromatin interaction
ENSG00000214803	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10087062	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10087137	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10087222	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10087374	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10089870	0.81[ASN][1000 genomes]
rs10091808	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10092616	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13439237	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13439439	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13439443	0.85[ASN][1000 genomes]
rs17295226	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17295548	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17360746	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17360788	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4374970	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4504618	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4593526	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4871476	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4871477	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4871478	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4871480	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4871481	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4871482	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55784871	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55945711	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56068026	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56218959	0.92[ASN][1000 genomes]
rs56234976	0.84[ASN][1000 genomes]
rs56383080	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60167901	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60995425	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66467223	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66961607	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67712436	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67815046	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68047305	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6984141	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6984458	0.95[EUR][1000 genomes]
rs6984642	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6984921	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6986310	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7003974	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7011052	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7011213	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7011528	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72719397	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73330303	0.84[ASN][1000 genomes]
rs73330304	0.84[ASN][1000 genomes]
rs73345185	0.84[ASN][1000 genomes]
rs7842882	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9297693	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9643192	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9969472	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9969473	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9969475	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9969479	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9969480	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9969624	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125274800-125287400	Weak transcription	Fetal Brain Male	brain
2	chr8:125281200-125284400	Enhancers	Fetal Intestine Large	intestine
3	chr8:125281200-125284600	Enhancers	Psoas Muscle	Psoas
4	chr8:125281600-125284200	Weak transcription	Right Atrium	heart
5	chr8:125281600-125285000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr8:125282000-125284200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr8:125282200-125284400	Enhancers	Fetal Intestine Small	intestine
8	chr8:125282200-125285600	Enhancers	NHDF-Ad	bronchial
9	chr8:125282400-125284600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:125282600-125284600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:125282800-125284400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:125282800-125284400	Enhancers	Left Ventricle	heart
13	chr8:125282800-125284400	Enhancers	HSMMtube	muscle
14	chr8:125282800-125284800	Enhancers	HUVEC	blood vessel
15	chr8:125282800-125285400	Flanking Active TSS	Hela-S3	cervix
16	chr8:125282800-125285400	Enhancers	NHLF	lung
17	chr8:125282800-125285600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:125283200-125284400	Enhancers	Colon Smooth Muscle	Colon
19	chr8:125283200-125285000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:125283200-125285600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:125283400-125284400	Enhancers	HMEC	breast
22	chr8:125283400-125284400	Enhancers	NHEK	skin
23	chr8:125283400-125284600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:125283400-125284600	Enhancers	HSMM	muscle
25	chr8:125283400-125285400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:125283600-125284200	Enhancers	Fetal Stomach	stomach
27	chr8:125283600-125284400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:125283600-125284400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:125283600-125284400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr8:125283800-125284400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:125283800-125284400	Enhancers	HepG2	liver
32	chr8:125283800-125285000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:125284000-125284200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:125284000-125284200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:125284000-125284200	Enhancers	Fetal Heart	heart
36	chr8:125284000-125284200	Enhancers	Placenta	Placenta
37	chr8:125284000-125284400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr8:125284000-125284400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr8:125284000-125284400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:125284000-125284400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:125284000-125284400	Enhancers	Pancreas	Pancrea
42	chr8:125284000-125284400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr8:125284000-125284400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr8:125284000-125284400	Flanking Active TSS	K562	blood
45	chr8:125284000-125284400	Flanking Active TSS	Osteobl	bone
46	chr8:125284000-125285000	Flanking Active TSS	NH-A	brain
47	chr8:125284000-125285200	Enhancers	Right Ventricle	heart
48	chr8:125284000-125285600	Flanking Active TSS	A549	lung

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