Variant report

Variant	rs6984642
Chromosome Location	chr8:125270609-125270610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10087001	0.82[ASN][1000 genomes]
rs10087062	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10087137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10087222	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10087374	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10091808	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10092616	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13439237	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13439439	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16899475	0.82[ASN][1000 genomes]
rs17295226	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17295548	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17360690	0.80[ASN][1000 genomes]
rs17360711	0.82[ASN][1000 genomes]
rs17360746	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17360788	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4374970	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4504618	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4593526	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4871476	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871477	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871478	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871480	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871481	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871482	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55784871	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55945711	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56068026	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56383080	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60167901	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60995425	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66467223	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66961607	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67153514	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67712436	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67815046	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68047305	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6984141	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6984458	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6984921	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986310	0.88[EUR][1000 genomes]
rs7003974	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7011052	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7011213	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7011528	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72719397	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73345110	0.82[ASN][1000 genomes]
rs73345113	0.82[ASN][1000 genomes]
rs73345158	0.82[ASN][1000 genomes]
rs7842882	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9297693	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643192	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969472	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9969473	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9969475	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9969479	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9969480	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9969624	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6984642	RP11-383J24.1	cis	Muscle Skeletal	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125258400-125282800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:125259600-125273800	Weak transcription	Left Ventricle	heart
3	chr8:125263600-125270800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:125264200-125272600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr8:125264200-125273000	Weak transcription	Primary T cells from cord blood	blood
6	chr8:125264400-125272200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr8:125264400-125272600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr8:125266200-125271000	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:125268000-125273400	Weak transcription	Fetal Intestine Large	intestine
10	chr8:125268200-125271200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:125268200-125272200	Weak transcription	Hela-S3	cervix
12	chr8:125268200-125273400	Weak transcription	A549	lung
13	chr8:125268400-125273600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:125268400-125273800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:125268400-125273800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:125268600-125273400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr8:125268600-125273400	Weak transcription	HUVEC	blood vessel
18	chr8:125268800-125273400	Weak transcription	Fetal Intestine Small	intestine
19	chr8:125268800-125273800	Weak transcription	Spleen	Spleen
20	chr8:125269000-125270800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr8:125269000-125273800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:125269400-125272600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:125269800-125272400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:125269800-125273400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:125269800-125273400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:125269800-125273600	Weak transcription	GM12878-XiMat	blood
27	chr8:125270000-125273400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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