Variant report

Variant	rs671606
Chromosome Location	chr12:31006655-31006656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11051136	1.00[ASN][1000 genomes]
rs11051143	1.00[ASN][1000 genomes]
rs12322523	1.00[ASN][1000 genomes]
rs12828817	1.00[ASN][1000 genomes]
rs256700	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2629426	1.00[ASN][1000 genomes]
rs33156	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33159	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33162	1.00[ASN][1000 genomes]
rs33166	1.00[ASN][1000 genomes]
rs33167	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33168	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33169	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33172	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33175	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33176	0.89[EUR][1000 genomes]
rs33177	0.87[EUR][1000 genomes]
rs33178	0.89[EUR][1000 genomes]
rs33179	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33207	1.00[ASN][1000 genomes]
rs33211	1.00[ASN][1000 genomes]
rs33214	1.00[ASN][1000 genomes]
rs33216	1.00[ASN][1000 genomes]
rs33218	1.00[ASN][1000 genomes]
rs34352926	1.00[ASN][1000 genomes]
rs34634684	1.00[ASN][1000 genomes]
rs35274629	1.00[ASN][1000 genomes]
rs56203216	1.00[ASN][1000 genomes]
rs67353217	1.00[ASN][1000 genomes]
rs674417	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs675206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73284434	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949148	chr12:30800040-31131712	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv34091	chr12:30927650-31061815	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1052957	chr12:30951520-31191197	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv541439	chr12:30951520-31191197	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1052869	chr12:30951520-31399162	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	esv2422447	chr12:30954811-31449815	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv832362	chr12:30957786-31124983	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1053711	chr12:30959987-31156297	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv558030	chr12:30969675-31266287	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv3377311	chr12:30984179-31044167	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31004800-31006800	Weak transcription	Esophagus	oesophagus
2	chr12:31006400-31006800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:31006400-31007000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:31006600-31006800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links