Variant report

Variant	rs67174962
Chromosome Location	chr5:164760067-164760068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10515892	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1432991	0.83[ASN][1000 genomes]
rs17052767	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17074826	0.83[ASN][1000 genomes]
rs17075255	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075345	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17075367	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2861141	0.84[ASN][1000 genomes]
rs4574566	0.84[ASN][1000 genomes]
rs67426053	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67471064	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6893596	0.84[ASN][1000 genomes]
rs72821615	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164752800-164760400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:164753000-164760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:164753200-164760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:164753400-164760400	Weak transcription	NHEK	skin
5	chr5:164756000-164760800	Weak transcription	HMEC	breast
6	chr5:164756400-164760800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:164757600-164763000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:164760000-164760400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:164760000-164761400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:164760000-164761600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr5:164760000-164761800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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