Variant report

Variant	rs72821615
Chromosome Location	chr5:164752767-164752768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10515892	0.82[ASN][1000 genomes]
rs1432991	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17052767	0.80[ASN][1000 genomes]
rs17074826	0.84[ASN][1000 genomes]
rs17074899	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17075255	0.85[ASN][1000 genomes]
rs17075345	0.88[ASN][1000 genomes]
rs17075367	0.82[ASN][1000 genomes]
rs2861141	0.85[ASN][1000 genomes]
rs4574566	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6556815	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67174962	0.85[ASN][1000 genomes]
rs67426053	0.82[ASN][1000 genomes]
rs67471064	0.82[ASN][1000 genomes]
rs6893596	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv526419	chr5:164675241-164755174	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
6	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164749200-164754000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:164749200-164755800	Weak transcription	HUVEC	blood vessel
3	chr5:164751800-164753400	Enhancers	NHEK	skin
4	chr5:164752000-164753200	Enhancers	HMEC	breast
5	chr5:164752200-164752800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:164752400-164752800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:164752400-164753000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:164752400-164753200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:164752600-164753600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links