Variant report

Variant	rs6718999
Chromosome Location	chr2:189117638-189117639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189116827..189120729-chr2:189123718..189126978,3	K562	blood:
2	chr2:189111332..189114158-chr2:189116062..189118762,3	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10167709	0.85[ASN][1000 genomes]
rs10169317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170220	0.93[JPT][hapmap]
rs10174928	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10179504	0.87[ASN][1000 genomes]
rs10180222	0.81[ASN][1000 genomes]
rs10180687	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10185828	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10189376	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10199112	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199264	0.89[ASN][1000 genomes]
rs10202605	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10206696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209733	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10210696	1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10211189	0.93[JPT][hapmap]
rs10804020	0.81[JPT][hapmap]
rs10931355	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10931358	0.91[JPT][hapmap]
rs1125099	0.92[JPT][hapmap]
rs12151691	0.82[ASN][1000 genomes]
rs12329399	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12619361	0.81[ASN][1000 genomes]
rs12693489	0.82[ASN][1000 genomes]
rs12693498	0.85[ASN][1000 genomes]
rs12987194	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12990374	0.85[ASN][1000 genomes]
rs13008931	0.81[JPT][hapmap]
rs13014693	0.81[ASN][1000 genomes]
rs13384413	0.83[ASN][1000 genomes]
rs13388723	0.89[ASN][1000 genomes]
rs13388746	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13389155	0.94[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13389879	0.85[ASN][1000 genomes]
rs13397237	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13397399	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13412312	0.89[ASN][1000 genomes]
rs13415123	0.82[ASN][1000 genomes]
rs13420369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423891	0.86[ASN][1000 genomes]
rs13424536	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34209722	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34253555	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34737832	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35954758	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35964306	0.81[ASN][1000 genomes]
rs36070354	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3890574	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs4261684	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4274570	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4340469	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs4349309	0.85[ASN][1000 genomes]
rs4361092	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4381754	0.93[JPT][hapmap]
rs4398237	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4402719	0.81[ASN][1000 genomes]
rs4430902	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4433962	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4458180	0.93[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4513258	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4516391	0.81[JPT][hapmap]
rs4522565	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4592814	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4640356	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4666758	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4667227	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs4992744	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58978246	0.82[ASN][1000 genomes]
rs60796263	0.85[ASN][1000 genomes]
rs6434269	0.81[JPT][hapmap]
rs6434273	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66971459	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6704814	0.94[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs6706666	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67086516	0.82[ASN][1000 genomes]
rs67092191	0.89[ASN][1000 genomes]
rs6718697	0.87[YRI][hapmap]
rs67240894	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6727850	0.94[CEU][hapmap];0.92[JPT][hapmap]
rs6729182	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6737728	0.93[JPT][hapmap]
rs6739162	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6743120	0.94[CEU][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs6743636	0.93[JPT][hapmap]
rs6744629	0.81[JPT][hapmap]
rs6756220	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs6759539	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759766	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761769	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs67790470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67798410	0.89[ASN][1000 genomes]
rs67919447	0.89[ASN][1000 genomes]
rs72907672	0.89[ASN][1000 genomes]
rs7420700	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7566619	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs7574262	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs7582137	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585703	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs7586390	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs7593215	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7593546	0.81[JPT][hapmap]
rs7595327	0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs7595377	0.87[CEU][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7598279	0.82[ASN][1000 genomes]
rs7599516	0.81[ASN][1000 genomes]
rs7606178	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs7607063	0.85[ASN][1000 genomes]
rs9288157	0.84[ASN][1000 genomes]
rs9808557	0.88[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv431879	chr2:189079494-189118494	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv511165	chr2:189112811-189122229	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189100400-189121200	Weak transcription	K562	blood
2	chr2:189116200-189118800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links