Variant report

Variant	rs6759539
Chromosome Location	chr2:189113267-189113268
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189111332..189114158-chr2:189116062..189118762,3	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10167709	0.85[ASN][1000 genomes]
rs10169317	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174928	0.85[ASN][1000 genomes]
rs10179504	0.87[ASN][1000 genomes]
rs10180222	0.81[ASN][1000 genomes]
rs10180687	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10185828	0.82[ASN][1000 genomes]
rs10189376	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10199112	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199264	0.89[ASN][1000 genomes]
rs10202605	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10206696	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209733	0.82[ASN][1000 genomes]
rs10210696	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10221554	0.83[AFR][1000 genomes]
rs10931355	0.85[ASN][1000 genomes]
rs11676580	0.83[AFR][1000 genomes]
rs12151691	0.82[ASN][1000 genomes]
rs12329399	0.85[ASN][1000 genomes]
rs12614592	0.83[AFR][1000 genomes]
rs12619361	0.81[ASN][1000 genomes]
rs12693489	0.82[ASN][1000 genomes]
rs12693498	0.85[ASN][1000 genomes]
rs12987194	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12990374	0.85[ASN][1000 genomes]
rs13014693	0.81[ASN][1000 genomes]
rs13384413	0.83[ASN][1000 genomes]
rs13388723	0.89[ASN][1000 genomes]
rs13388746	0.87[ASN][1000 genomes]
rs13389155	0.85[ASN][1000 genomes]
rs13389879	0.85[ASN][1000 genomes]
rs13397237	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13397399	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13403138	0.84[AFR][1000 genomes]
rs13412312	0.89[ASN][1000 genomes]
rs13415123	0.82[ASN][1000 genomes]
rs13416775	0.83[AFR][1000 genomes]
rs13420369	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423891	0.86[ASN][1000 genomes]
rs13424536	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13432874	0.83[AFR][1000 genomes]
rs34209722	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34253555	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34737832	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35954758	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35964306	0.81[ASN][1000 genomes]
rs36070354	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4261684	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4274570	0.84[ASN][1000 genomes]
rs4337443	0.84[AFR][1000 genomes]
rs4349309	0.85[ASN][1000 genomes]
rs4361092	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4398237	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4402719	0.81[ASN][1000 genomes]
rs4430902	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4433962	0.89[ASN][1000 genomes]
rs4458180	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4522565	0.89[ASN][1000 genomes]
rs4541223	0.84[AFR][1000 genomes]
rs4592814	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4595930	0.84[AFR][1000 genomes]
rs4640356	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4666758	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4992744	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58978246	0.82[ASN][1000 genomes]
rs60796263	0.85[ASN][1000 genomes]
rs6434273	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66579041	0.84[AFR][1000 genomes]
rs66725342	0.84[AFR][1000 genomes]
rs66971459	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6706666	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6707721	0.84[AFR][1000 genomes]
rs6708455	0.87[AFR][1000 genomes]
rs67086516	0.82[ASN][1000 genomes]
rs67092191	0.89[ASN][1000 genomes]
rs6718999	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67240894	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6729182	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67324207	0.84[AFR][1000 genomes]
rs6739162	0.85[ASN][1000 genomes]
rs6749586	0.81[AFR][1000 genomes]
rs6759766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67790470	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67798410	0.89[ASN][1000 genomes]
rs67919447	0.89[ASN][1000 genomes]
rs68056256	0.83[AFR][1000 genomes]
rs72901581	0.84[AFR][1000 genomes]
rs72907672	0.89[ASN][1000 genomes]
rs73039927	0.83[AFR][1000 genomes]
rs7420700	0.85[ASN][1000 genomes]
rs7566619	0.81[ASN][1000 genomes]
rs7574262	0.81[ASN][1000 genomes]
rs7582137	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585703	0.81[ASN][1000 genomes]
rs7586390	0.81[ASN][1000 genomes]
rs7586536	0.84[AFR][1000 genomes]
rs7593215	0.85[ASN][1000 genomes]
rs7595377	0.82[ASN][1000 genomes]
rs7596399	0.84[AFR][1000 genomes]
rs7598279	0.82[ASN][1000 genomes]
rs7599516	0.81[ASN][1000 genomes]
rs7601023	0.84[AFR][1000 genomes]
rs7607063	0.85[ASN][1000 genomes]
rs9288157	0.84[ASN][1000 genomes]
rs9653312	0.84[AFR][1000 genomes]
rs980065	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv431879	chr2:189079494-189118494	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv511165	chr2:189112811-189122229	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189100400-189121200	Weak transcription	K562	blood
2	chr2:189110200-189115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:189111000-189115200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:189112400-189114000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:189112400-189114200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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