Variant report

Variant	rs67211370
Chromosome Location	chr2:189135164-189135165
allele	AA/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10175259	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10180222	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10931343	0.84[AMR][1000 genomes]
rs11900558	0.84[AMR][1000 genomes]
rs12464904	0.81[AMR][1000 genomes]
rs12613615	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12619361	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12693487	0.84[AMR][1000 genomes]
rs12693489	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13008931	0.85[ASN][1000 genomes]
rs13014693	0.80[ASN][1000 genomes]
rs1898986	0.80[AMR][1000 genomes]
rs35964306	0.80[ASN][1000 genomes]
rs4402719	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4426503	0.85[ASN][1000 genomes]
rs4500907	0.80[AMR][1000 genomes]
rs4516391	0.84[ASN][1000 genomes]
rs4591312	0.85[ASN][1000 genomes]
rs4610010	0.85[ASN][1000 genomes]
rs4641903	0.84[AMR][1000 genomes]
rs4667215	0.85[ASN][1000 genomes]
rs6434269	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6711822	0.87[AMR][1000 genomes]
rs6712056	0.85[ASN][1000 genomes]
rs6719273	0.80[AMR][1000 genomes]
rs6744150	0.84[AMR][1000 genomes]
rs6744629	0.85[ASN][1000 genomes]
rs7425596	0.85[ASN][1000 genomes]
rs7566619	0.80[ASN][1000 genomes]
rs7574262	0.80[ASN][1000 genomes]
rs7585703	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7586390	0.80[ASN][1000 genomes]
rs7593546	0.85[ASN][1000 genomes]
rs7598279	0.89[ASN][1000 genomes]
rs7598785	0.84[AMR][1000 genomes]
rs7599516	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1811040	chr2:189119837-189150420	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189121800-189147800	Weak transcription	K562	blood
2	chr2:189131600-189140800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links