Variant report

Variant	rs10175259
Chromosome Location	chr2:189121592-189121593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189119512..189121195-chr2:189121212..189123988,2	K562	blood:
2	chr2:189121043..189124005-chr2:189124856..189127176,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10180222	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1036649	0.85[ASN][1000 genomes]
rs10804020	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10931343	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10931344	0.87[ASN][1000 genomes]
rs10931359	0.87[JPT][hapmap]
rs11689976	0.81[CEU][hapmap]
rs11900558	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12464904	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12465164	0.87[JPT][hapmap]
rs12465625	0.87[JPT][hapmap]
rs12473653	0.86[JPT][hapmap]
rs12613615	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12619361	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12624002	0.87[JPT][hapmap]
rs12693487	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693489	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13008931	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes]
rs13014693	0.85[ASN][1000 genomes]
rs1898986	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35964306	0.85[ASN][1000 genomes]
rs4274570	0.80[JPT][hapmap];0.92[YRI][hapmap]
rs4340469	0.92[YRI][hapmap]
rs4402719	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4426503	0.88[ASN][1000 genomes]
rs4500907	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4516391	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.87[ASN][1000 genomes]
rs4591312	0.88[ASN][1000 genomes]
rs4610010	0.88[ASN][1000 genomes]
rs4641903	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4666759	0.82[ASN][1000 genomes]
rs4667215	0.88[ASN][1000 genomes]
rs4667227	0.92[YRI][hapmap]
rs59106803	0.82[ASN][1000 genomes]
rs62183206	0.82[ASN][1000 genomes]
rs6434269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6704814	0.89[YRI][hapmap]
rs6711822	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6712056	0.88[ASN][1000 genomes]
rs6719273	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67211370	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6744150	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6744629	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs6761769	0.90[YRI][hapmap]
rs7425596	0.88[ASN][1000 genomes]
rs7566619	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7574262	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7585703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7586390	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7593546	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.88[ASN][1000 genomes]
rs7595377	0.89[YRI][hapmap]
rs7598279	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7598785	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7599516	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7606178	0.93[YRI][hapmap]
rs893745	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv511165	chr2:189112811-189122229	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3457161	chr2:189117807-189122905	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3522728	chr2:189118457-189122255	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3457165	chr2:189118732-189122080	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3522731	chr2:189118957-189122155	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv511829	chr2:189119345-189121787	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1811040	chr2:189119837-189150420	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189119800-189122600	Weak transcription	Fetal Heart	heart
2	chr2:189121200-189121800	Enhancers	K562	blood
3	chr2:189121400-189121600	Enhancers	Aorta	Aorta

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