Variant report

Variant	rs6723678
Chromosome Location	chr2:85776155-85776156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:85774752..85777473-chr6:30709044..30711134,2	MCF-7	breast:
2	chr2:85771530..85776249-chr2:85829549..85833813,5	K562	blood:
3	chr2:85705123..85709274-chr2:85772334..85776338,4	K562	blood:
4	chr2:85773887..85776884-chr2:85959651..85962440,2	K562	blood:
5	chr2:85772605..85778348-chr2:85801967..85806164,7	K562	blood:
6	chr2:85771408..85781005-chr2:85784986..85791406,15	MCF-7	breast:
7	chr2:85647074..85649916-chr2:85775503..85777357,3	MCF-7	breast:
8	chr2:85774786..85776428-chr2:85839245..85841196,2	K562	blood:
9	chr2:85635544..85709381-chr2:85757395..85791508,633	K562	blood:
10	chr2:85657107..85663339-chr2:85772657..85777869,10	MCF-7	breast:
11	chr2:85773971..85776196-chr2:85797689..85800587,3	K562	blood:
12	chr2:85575168..85576908-chr2:85775464..85777234,2	MCF-7	breast:
13	chr2:85774772..85777555-chr2:85802674..85804716,2	MCF-7	breast:
14	chr2:85641902..85652165-chr2:85771116..85782225,51	MCF-7	breast:
15	chr2:85774425..85777355-chr2:85827588..85829458,2	K562	blood:
16	chr2:85615286..85623438-chr2:85771409..85780547,22	MCF-7	breast:
17	chr2:85609654..85691056-chr2:85759187..85790499,656	K562	blood:
18	chr2:85611082..85627761-chr2:85764356..85782623,83	K562	blood:
19	chr2:85564176..85568715-chr2:85772750..85777610,4	K562	blood:
20	chr2:85669464..85671667-chr2:85774777..85776435,2	MCF-7	breast:
21	chr2:85597006..85598597-chr2:85774380..85776159,2	K562	blood:
22	chr2:85630277..85634541-chr2:85773340..85777509,4	K562	blood:
23	chr2:85774272..85776282-chr2:85797385..85799189,3	K562	blood:
24	chr2:85771229..85776857-chr2:85808442..85817073,8	K562	blood:
25	chr2:85589339..85593545-chr2:85771019..85776270,4	K562	blood:
26	chr2:85615241..85625394-chr2:85772377..85782714,25	MCF-7	breast:
27	chr2:85601232..85604311-chr2:85772616..85776174,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115486	Chromatin interaction
ENSG00000115459	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000168899	Chromatin interaction
ENSG00000118640	Chromatin interaction
ENSG00000042445	Chromatin interaction
ENSG00000168883	Chromatin interaction
ENSG00000252293	Chromatin interaction
ENSG00000199936	Chromatin interaction
ENSG00000168890	Chromatin interaction
ENSG00000273196	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000244399	Chromatin interaction
ENSG00000207207	Chromatin interaction
ENSG00000152292	Chromatin interaction
ENSG00000042493	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57313428	0.90[AFR][1000 genomes]
rs58540395	1.00[AFR][1000 genomes]
rs59229326	0.90[AFR][1000 genomes]
rs6751560	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs72923003	1.00[AFR][1000 genomes]
rs72940556	0.94[AFR][1000 genomes]
rs72940558	0.98[AFR][1000 genomes]
rs72940569	1.00[AFR][1000 genomes]
rs72940575	0.94[AFR][1000 genomes]
rs7592171	0.87[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6723678	ST3GAL5	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85768400-85777000	Strong transcription	Placenta	Placenta
2	chr2:85768400-85778000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:85768400-85786600	Strong transcription	Fetal Muscle Trunk	muscle
4	chr2:85768600-85779000	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr2:85768600-85786200	Strong transcription	Fetal Thymus	thymus
6	chr2:85769400-85776200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:85769400-85777000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:85769400-85782800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:85769400-85786600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:85769400-85786600	Strong transcription	Brain Germinal Matrix	brain
11	chr2:85769400-85787800	Weak transcription	Right Atrium	heart
12	chr2:85769800-85777200	Strong transcription	Adipose Nuclei	Adipose
13	chr2:85769800-85779400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:85769800-85782800	Strong transcription	Thymus	Thymus
15	chr2:85769800-85786400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:85769800-85787000	Strong transcription	Fetal Stomach	stomach
17	chr2:85769800-85788000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr2:85770000-85777000	Strong transcription	Fetal Muscle Leg	muscle
19	chr2:85770000-85779000	Strong transcription	Liver	Liver
20	chr2:85770000-85783400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:85770200-85777000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr2:85770200-85787800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:85770400-85779200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:85770400-85786200	Strong transcription	Fetal Intestine Large	intestine
25	chr2:85770400-85786400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:85770600-85777000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:85770600-85777200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr2:85770600-85777200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr2:85770600-85779000	Strong transcription	Brain Anterior Caudate	brain
30	chr2:85770600-85781400	Weak transcription	Psoas Muscle	Psoas
31	chr2:85770600-85786400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:85770600-85786600	Strong transcription	Fetal Brain Female	brain
33	chr2:85770800-85778600	Weak transcription	Stomach Mucosa	stomach
34	chr2:85771000-85786400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr2:85771800-85786200	Strong transcription	Fetal Intestine Small	intestine
36	chr2:85772000-85786600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:85772800-85777000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr2:85772800-85779600	Weak transcription	Right Ventricle	heart
39	chr2:85773000-85776600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr2:85773000-85777000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr2:85773000-85777000	Weak transcription	Fetal Brain Male	brain
42	chr2:85773000-85777200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr2:85773000-85777200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr2:85773000-85777200	Weak transcription	Hela-S3	cervix
45	chr2:85773000-85778400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:85773200-85777000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr2:85773200-85777000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr2:85773200-85777000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:85773200-85777000	Weak transcription	Colonic Mucosa	Colon
50	chr2:85773200-85777000	Weak transcription	K562	blood

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