Variant report

Variant	rs6751560
Chromosome Location	chr2:85786074-85786075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:85783158..85786127-chr2:85837683..85839648,2	K562	blood:
2	chr2:85644868..85648304-chr2:85783356..85788933,7	MCF-7	breast:
3	chr2:85635544..85709381-chr2:85757395..85791508,633	K562	blood:
4	chr2:85785429..85790468-chr2:85820934..85826927,9	MCF-7	breast:
5	chr2:85552687..85556977-chr2:85784981..85789201,5	K562	blood:
6	chr2:85609654..85691056-chr2:85759187..85790499,656	K562	blood:
7	chr2:85784214..85789573-chr2:85827295..85831622,10	MCF-7	breast:
8	chr2:85771408..85781005-chr2:85784986..85791406,15	MCF-7	breast:
9	chr2:85765231..85769518-chr2:85784806..85790228,6	MCF-7	breast:
10	chr2:85553459..85556724-chr2:85785432..85789140,4	MCF-7	breast:
11	chr2:85785973..85791563-chr2:85836230..85840689,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168890	Chromatin interaction
ENSG00000168883	Chromatin interaction
ENSG00000152291	Chromatin interaction
ENSG00000273196	Chromatin interaction
ENSG00000042493	Chromatin interaction
ENSG00000152292	Chromatin interaction
ENSG00000168906	Chromatin interaction
ENSG00000115486	Chromatin interaction
ENSG00000199936	Chromatin interaction
ENSG00000115459	Chromatin interaction
ENSG00000252293	Chromatin interaction
ENSG00000207207	Chromatin interaction
ENSG00000244399	Chromatin interaction
ENSG00000168894	Chromatin interaction
ENSG00000168887	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12470957	1.00[ASN][1000 genomes]
rs17026372	1.00[AMR][1000 genomes]
rs17026452	1.00[ASN][1000 genomes]
rs57313428	0.90[AFR][1000 genomes]
rs57922790	1.00[ASN][1000 genomes]
rs58540395	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59229326	0.90[AFR][1000 genomes]
rs6723678	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs72923003	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72938590	1.00[AMR][1000 genomes]
rs72938596	1.00[ASN][1000 genomes]
rs72940556	0.94[AFR][1000 genomes]
rs72940558	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72940569	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72940575	0.94[AFR][1000 genomes]
rs7592171	0.87[AFR][1000 genomes]
rs9751373	1.00[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6751560	ST3GAL5	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85768400-85786600	Strong transcription	Fetal Muscle Trunk	muscle
2	chr2:85768600-85786200	Strong transcription	Fetal Thymus	thymus
3	chr2:85769400-85786600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:85769400-85786600	Strong transcription	Brain Germinal Matrix	brain
5	chr2:85769400-85787800	Weak transcription	Right Atrium	heart
6	chr2:85769800-85786400	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:85769800-85787000	Strong transcription	Fetal Stomach	stomach
8	chr2:85769800-85788000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr2:85770200-85787800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:85770400-85786200	Strong transcription	Fetal Intestine Large	intestine
11	chr2:85770400-85786400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:85770600-85786400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:85770600-85786600	Strong transcription	Fetal Brain Female	brain
14	chr2:85771000-85786400	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr2:85771800-85786200	Strong transcription	Fetal Intestine Small	intestine
16	chr2:85772000-85786600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:85773400-85786200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:85774600-85786200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:85775600-85786600	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr2:85776200-85786400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:85776200-85786400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr2:85776600-85787000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:85776800-85786200	Strong transcription	Primary T cells from cord blood	blood
24	chr2:85777000-85786200	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:85777000-85786400	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr2:85777000-85786400	Strong transcription	Lung	lung
27	chr2:85777000-85787200	Strong transcription	NHEK	skin
28	chr2:85777200-85786400	Strong transcription	Rectal Smooth Muscle	rectum
29	chr2:85777200-85786600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:85777400-85786400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:85777600-85786400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:85777800-85786400	Strong transcription	Osteobl	bone
33	chr2:85778000-85786200	Strong transcription	NH-A	brain
34	chr2:85778000-85786400	Strong transcription	HSMMtube	muscle
35	chr2:85778200-85786200	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr2:85778200-85786400	Strong transcription	NHLF	lung
37	chr2:85778200-85787000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr2:85778600-85786400	Strong transcription	Hela-S3	cervix
39	chr2:85779000-85786400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr2:85779200-85786200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr2:85779200-85786400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr2:85779200-85787200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr2:85779400-85786200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr2:85779400-85786600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr2:85779600-85786200	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr2:85779600-85786400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:85779600-85786400	Strong transcription	Brain Anterior Caudate	brain
48	chr2:85779600-85786600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr2:85779600-85787000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr2:85779600-85787000	Strong transcription	Fetal Muscle Leg	muscle

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