Variant report

Variant	rs6724208
Chromosome Location	chr2:209180548-209180549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10171006	0.94[ASN][1000 genomes]
rs10173938	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10174541	0.98[EUR][1000 genomes]
rs10176626	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177810	0.84[EUR][1000 genomes]
rs10186350	0.95[EUR][1000 genomes]
rs10189031	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190458	0.82[EUR][1000 genomes]
rs10194539	0.98[EUR][1000 genomes]
rs10197958	0.85[ASN][1000 genomes]
rs10198535	0.95[EUR][1000 genomes]
rs10201702	0.94[ASN][1000 genomes]
rs10208004	0.91[ASN][1000 genomes]
rs10497897	0.98[EUR][1000 genomes]
rs10497898	0.98[EUR][1000 genomes]
rs10804168	0.94[ASN][1000 genomes]
rs10932256	0.94[ASN][1000 genomes]
rs10932259	0.94[ASN][1000 genomes]
rs10932260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677618	0.91[ASN][1000 genomes]
rs11691208	0.94[ASN][1000 genomes]
rs11691313	0.94[ASN][1000 genomes]
rs11693993	0.83[ASN][1000 genomes]
rs11898653	0.95[EUR][1000 genomes]
rs11901959	0.98[EUR][1000 genomes]
rs12185709	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12475932	0.96[EUR][1000 genomes]
rs12479282	0.91[ASN][1000 genomes]
rs12623816	0.94[ASN][1000 genomes]
rs12694104	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12694105	0.91[ASN][1000 genomes]
rs13392540	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13395304	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13407268	0.84[EUR][1000 genomes]
rs13407897	0.98[EUR][1000 genomes]
rs13412043	0.98[EUR][1000 genomes]
rs1370370	0.94[ASN][1000 genomes]
rs1584200	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840898	0.94[ASN][1000 genomes]
rs16840910	0.94[ASN][1000 genomes]
rs16840936	0.94[ASN][1000 genomes]
rs1898437	0.80[ASN][1000 genomes]
rs1900239	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196604	0.86[ASN][1000 genomes]
rs2304545	0.86[EUR][1000 genomes]
rs2363465	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2363466	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28418905	0.86[EUR][1000 genomes]
rs2885786	0.85[ASN][1000 genomes]
rs4673390	0.91[ASN][1000 genomes]
rs4673391	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4673392	0.85[ASN][1000 genomes]
rs4673393	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4673395	0.94[ASN][1000 genomes]
rs4675748	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4675750	0.94[ASN][1000 genomes]
rs4675751	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4675761	0.83[ASN][1000 genomes]
rs57797425	0.94[ASN][1000 genomes]
rs60446438	0.85[ASN][1000 genomes]
rs6435441	0.94[ASN][1000 genomes]
rs6435443	0.94[ASN][1000 genomes]
rs66887797	0.95[EUR][1000 genomes]
rs6708926	0.94[ASN][1000 genomes]
rs6711933	0.94[ASN][1000 genomes]
rs6733607	0.94[ASN][1000 genomes]
rs6736599	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742461	0.94[ASN][1000 genomes]
rs67669827	0.98[EUR][1000 genomes]
rs67965883	0.88[EUR][1000 genomes]
rs73056463	0.98[EUR][1000 genomes]
rs7355562	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73983727	0.88[ASN][1000 genomes]
rs7557303	0.98[EUR][1000 genomes]
rs7569723	0.94[ASN][1000 genomes]
rs7574324	0.94[ASN][1000 genomes]
rs7581075	0.94[ASN][1000 genomes]
rs7587752	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592472	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs893256	0.94[ASN][1000 genomes]
rs9283521	0.94[ASN][1000 genomes]
rs9288392	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934712	0.94[ASN][1000 genomes]
rs934714	0.94[ASN][1000 genomes]
rs959855	0.94[ASN][1000 genomes]
rs999890	0.88[EUR][1000 genomes]
rs999891	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv875752	chr2:209141066-209235373	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209147400-209225600	Weak transcription	Stomach Mucosa	stomach
2	chr2:209159200-209182200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:209160000-209188800	Weak transcription	Small Intestine	intestine
4	chr2:209163000-209187400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr2:209163200-209180600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr2:209163200-209187400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr2:209163400-209180600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:209163400-209187400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr2:209163600-209180600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:209163600-209182200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:209165800-209204000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:209166200-209189600	Weak transcription	Pancreas	Pancrea
13	chr2:209166600-209189000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:209170000-209182200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:209170000-209182200	Weak transcription	Spleen	Spleen
16	chr2:209170000-209183000	Weak transcription	Psoas Muscle	Psoas
17	chr2:209170000-209190000	Weak transcription	Right Ventricle	heart
18	chr2:209170200-209189600	Weak transcription	Colonic Mucosa	Colon
19	chr2:209171400-209184000	Weak transcription	HUVEC	blood vessel
20	chr2:209174000-209187400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:209175600-209180600	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr2:209176000-209180600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr2:209176800-209184000	Strong transcription	Adipose Nuclei	Adipose
24	chr2:209177200-209182200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr2:209177600-209180600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr2:209177800-209182600	Weak transcription	Fetal Heart	heart
27	chr2:209178400-209180600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr2:209178400-209180600	Strong transcription	Fetal Intestine Small	intestine
29	chr2:209178400-209180600	Strong transcription	Fetal Stomach	stomach
30	chr2:209178600-209180600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr2:209178800-209180600	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr2:209178800-209180600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:209178800-209180600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:209178800-209180600	Strong transcription	Liver	Liver
35	chr2:209178800-209180600	Strong transcription	Fetal Muscle Leg	muscle
36	chr2:209178800-209180800	Strong transcription	Fetal Lung	lung
37	chr2:209178800-209183200	Strong transcription	Colon Smooth Muscle	Colon
38	chr2:209178800-209187400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr2:209179000-209180600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr2:209179000-209180600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr2:209179000-209180600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr2:209179000-209180600	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:209179000-209180600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr2:209179000-209180600	Strong transcription	Lung	lung
45	chr2:209179000-209180600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr2:209179000-209180600	Strong transcription	Thymus	Thymus
47	chr2:209179000-209180800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr2:209179000-209180800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr2:209179000-209181200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr2:209179000-209183000	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links