Variant report

Variant	rs1898437
Chromosome Location	chr2:209230087-209230088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr2:209229637-209230291	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000213081	TF binding region

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10175739	0.85[ASN][1000 genomes]
rs10176626	0.80[ASN][1000 genomes]
rs10186531	0.85[ASN][1000 genomes]
rs10189031	0.80[ASN][1000 genomes]
rs10208191	0.85[ASN][1000 genomes]
rs10208295	0.85[ASN][1000 genomes]
rs10210393	0.80[ASN][1000 genomes]
rs10932260	0.80[ASN][1000 genomes]
rs11693993	0.91[ASN][1000 genomes]
rs11695873	0.85[ASN][1000 genomes]
rs11891163	0.85[EUR][1000 genomes]
rs12617521	0.80[ASN][1000 genomes]
rs12617780	0.91[AMR][1000 genomes]
rs12618837	0.85[ASN][1000 genomes]
rs12621871	0.85[ASN][1000 genomes]
rs12694109	0.85[ASN][1000 genomes]
rs12991283	0.86[EUR][1000 genomes]
rs12998277	0.86[EUR][1000 genomes]
rs13395035	0.86[EUR][1000 genomes]
rs13400356	0.85[EUR][1000 genomes]
rs1437414	0.85[ASN][1000 genomes]
rs1465803	0.85[ASN][1000 genomes]
rs1465804	0.85[ASN][1000 genomes]
rs1469941	0.85[ASN][1000 genomes]
rs1529979	0.85[ASN][1000 genomes]
rs1561240	0.85[ASN][1000 genomes]
rs1866044	0.85[ASN][1000 genomes]
rs1866045	0.85[ASN][1000 genomes]
rs1898435	0.98[AMR][1000 genomes]
rs1898436	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1900239	0.80[ASN][1000 genomes]
rs2118295	0.85[ASN][1000 genomes]
rs2118296	0.85[ASN][1000 genomes]
rs2118297	0.85[ASN][1000 genomes]
rs2304544	0.85[ASN][1000 genomes]
rs2304545	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2363468	0.82[ASN][1000 genomes]
rs2363469	0.85[ASN][1000 genomes]
rs2363579	0.85[ASN][1000 genomes]
rs28885800	0.86[EUR][1000 genomes]
rs35217101	0.85[EUR][1000 genomes]
rs35293936	0.86[EUR][1000 genomes]
rs4673393	0.80[ASN][1000 genomes]
rs4675748	0.80[ASN][1000 genomes]
rs4675751	0.80[ASN][1000 genomes]
rs4675754	0.85[ASN][1000 genomes]
rs4675755	0.85[ASN][1000 genomes]
rs4675757	0.85[ASN][1000 genomes]
rs4675758	0.85[ASN][1000 genomes]
rs4675760	0.85[ASN][1000 genomes]
rs4675761	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57553077	0.85[ASN][1000 genomes]
rs59149007	0.85[ASN][1000 genomes]
rs6435444	0.85[ASN][1000 genomes]
rs6435445	0.85[ASN][1000 genomes]
rs6435446	0.85[ASN][1000 genomes]
rs6435450	0.85[ASN][1000 genomes]
rs6435452	0.85[ASN][1000 genomes]
rs6435454	0.85[ASN][1000 genomes]
rs6713477	0.85[ASN][1000 genomes]
rs6718402	0.85[ASN][1000 genomes]
rs6721780	0.85[ASN][1000 genomes]
rs6724208	0.80[ASN][1000 genomes]
rs6725548	0.91[AMR][1000 genomes]
rs6725932	0.85[ASN][1000 genomes]
rs6734963	0.85[ASN][1000 genomes]
rs6736599	0.80[ASN][1000 genomes]
rs6758207	0.85[ASN][1000 genomes]
rs67660353	0.86[EUR][1000 genomes]
rs7355562	0.91[ASN][1000 genomes]
rs7583022	0.94[AMR][1000 genomes]
rs7587752	0.80[ASN][1000 genomes]
rs7592472	0.91[ASN][1000 genomes]
rs893253	0.83[ASN][1000 genomes]
rs893255	0.85[ASN][1000 genomes]
rs9288392	0.80[ASN][1000 genomes]
rs9646839	0.85[ASN][1000 genomes]
rs976247	0.85[ASN][1000 genomes]
rs994696	0.85[ASN][1000 genomes]
rs994697	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv875752	chr2:209141066-209235373	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv437315	chr2:209204714-209249613	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv997721	chr2:209228673-209247209	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1006323	chr2:209228673-209247384	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209220200-209235200	Weak transcription	K562	blood
2	chr2:209221800-209231200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:209224800-209234200	Weak transcription	Placenta	Placenta
4	chr2:209226000-209230200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:209226000-209230800	Weak transcription	Spleen	Spleen
6	chr2:209226000-209234200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:209228200-209231200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:209228800-209234000	Weak transcription	Osteobl	bone
9	chr2:209229200-209234600	Weak transcription	Muscle Satellite Cultured Cells	--

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