Variant report

Variant	rs6725548
Chromosome Location	chr2:209256200-209256201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10175739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10180707	0.89[ASN][1000 genomes]
rs10182087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10186531	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10206991	0.94[EUR][1000 genomes]
rs10208191	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10208295	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10210393	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497899	0.89[ASN][1000 genomes]
rs1057390	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10932256	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10932259	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11897777	0.93[EUR][1000 genomes]
rs11897897	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12617780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12623816	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12694109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12694111	0.89[ASN][1000 genomes]
rs12991283	0.87[CEU][hapmap]
rs13000248	0.87[CEU][hapmap]
rs13392540	0.86[CHB][hapmap]
rs13397965	0.93[EUR][1000 genomes]
rs1370375	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1370377	1.00[JPT][hapmap]
rs1437414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1595329	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16840798	1.00[CHB][hapmap]
rs16840864	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16841092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16841231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16841233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16841234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16841242	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs1866044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1898435	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898436	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs1898437	0.91[AMR][1000 genomes]
rs2363468	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35293936	0.85[CEU][hapmap]
rs3856350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4234089	1.00[CEU][hapmap]
rs4462735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4558530	0.89[ASN][1000 genomes]
rs4673395	1.00[JPT][hapmap]
rs4675748	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4675750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4675751	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4675761	0.80[AMR][1000 genomes]
rs60916150	0.89[ASN][1000 genomes]
rs61195726	0.89[ASN][1000 genomes]
rs6713477	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6721780	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs6725932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6742461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7583022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs920218	0.89[ASN][1000 genomes]
rs9288394	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs959660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs962595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9646839	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209254600-209257600	Weak transcription	Aorta	Aorta

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