Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10180707	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10497899	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1057390	0.93[ASN][1000 genomes]
rs11897897	0.93[ASN][1000 genomes]
rs11899172	0.82[ASN][1000 genomes]
rs12617780	0.96[ASN][1000 genomes]
rs12694111	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13391882	0.89[ASN][1000 genomes]
rs13415155	0.82[ASN][1000 genomes]
rs1370375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1869534	0.89[ASN][1000 genomes]
rs1869535	0.82[ASN][1000 genomes]
rs1898435	0.89[ASN][1000 genomes]
rs4558530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56875378	0.82[ASN][1000 genomes]
rs57164492	0.82[ASN][1000 genomes]
rs58644588	0.82[ASN][1000 genomes]
rs60916150	1.00[ASN][1000 genomes]
rs6725548	0.89[ASN][1000 genomes]
rs6752329	0.82[ASN][1000 genomes]
rs7583022	0.96[ASN][1000 genomes]
rs7595880	0.82[ASN][1000 genomes]
rs920218	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9288394	0.86[ASN][1000 genomes]
rs962595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209280600-209281400	Enhancers	GM12878-XiMat	blood

Quick Search: