Variant report

Variant	rs1869534
Chromosome Location	chr2:209406414-209406415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:209405990..209410694-chr2:209410728..209415214,7	K562	blood:
2	chr2:209406410..209410199-chr2:209429309..209432294,3	K562	blood:
3	chr2:209405403..209410609-chr2:209410620..209413858,6	K562	blood:
4	chr2:209405882..209408450-chr2:209420370..209423296,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10172724	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10172914	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs10182087	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10182685	0.83[ASN][1000 genomes]
rs10197496	0.89[ASN][1000 genomes]
rs10208191	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10208295	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10210510	0.82[ASN][1000 genomes]
rs10497902	0.86[CHB][hapmap]
rs1057390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11897897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11899172	0.93[ASN][1000 genomes]
rs12617780	0.86[ASN][1000 genomes]
rs13385546	0.82[ASN][1000 genomes]
rs13389400	0.89[ASN][1000 genomes]
rs13391882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13415155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13418028	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1370375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1370377	1.00[JPT][hapmap]
rs1454317	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1595329	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16841092	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16841231	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16841233	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16841234	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16841242	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1869535	0.93[ASN][1000 genomes]
rs1898436	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3856350	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4462735	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4558530	0.89[ASN][1000 genomes]
rs56875378	0.85[ASN][1000 genomes]
rs57164492	0.85[ASN][1000 genomes]
rs58644588	0.85[ASN][1000 genomes]
rs60916150	0.89[ASN][1000 genomes]
rs61195726	0.89[ASN][1000 genomes]
rs6721780	1.00[JPT][hapmap]
rs6725932	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6752329	0.93[ASN][1000 genomes]
rs72981036	0.82[ASN][1000 genomes]
rs7583022	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7595880	0.93[ASN][1000 genomes]
rs7605626	0.83[ASN][1000 genomes]
rs9288394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs959660	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs962595	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9646839	0.88[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209405800-209409000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:209406000-209408200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:209406000-209410800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:209406400-209407400	Enhancers	Fetal Kidney	kidney
5	chr2:209406400-209407800	Enhancers	Stomach Mucosa	stomach
6	chr2:209406400-209407800	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links