Variant report

Variant	rs16841233
Chromosome Location	chr2:209318458-209318459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209313920..209316145-chr2:209316935..209318817,2	MCF-7	breast:
2	chr2:209318011..209319809-chr2:209319988..209321892,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10172914	0.83[CHD][hapmap]
rs10175739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10180707	0.86[ASN][1000 genomes]
rs10182087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10186531	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10208191	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10208295	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10210393	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497899	0.86[ASN][1000 genomes]
rs1057390	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10932256	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10932259	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11897897	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11899172	0.82[ASN][1000 genomes]
rs12617780	0.96[ASN][1000 genomes]
rs12623816	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12694109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12694111	0.86[ASN][1000 genomes]
rs13391882	0.89[ASN][1000 genomes]
rs13392540	0.86[CHB][hapmap]
rs13415155	0.82[ASN][1000 genomes]
rs1370375	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1370377	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1437414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1595329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16840864	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16841092	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16841231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16841234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16841242	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs1866044	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1866045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1869534	0.89[ASN][1000 genomes]
rs1869535	0.82[ASN][1000 genomes]
rs1898435	0.89[ASN][1000 genomes]
rs1898436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2363468	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3856350	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4462735	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4558530	1.00[ASN][1000 genomes]
rs4673395	1.00[JPT][hapmap]
rs4675748	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4675750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4675751	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56875378	0.82[ASN][1000 genomes]
rs57164492	0.82[ASN][1000 genomes]
rs58644588	0.82[ASN][1000 genomes]
rs60916150	1.00[ASN][1000 genomes]
rs61195726	1.00[ASN][1000 genomes]
rs6713477	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6721780	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs6725548	0.89[ASN][1000 genomes]
rs6725932	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6742461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6752329	0.82[ASN][1000 genomes]
rs7583022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7595880	0.82[ASN][1000 genomes]
rs920218	0.86[ASN][1000 genomes]
rs9288394	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs959660	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs962595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs9646839	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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