Variant report

Variant	rs7595880
Chromosome Location	chr2:209397246-209397247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10172724	0.89[ASN][1000 genomes]
rs10172914	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs10182087	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10182685	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10190717	0.83[ASN][1000 genomes]
rs10197496	0.89[ASN][1000 genomes]
rs10208191	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10208295	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10210510	0.82[ASN][1000 genomes]
rs10497902	0.86[CHB][hapmap];0.85[CHD][hapmap];0.80[ASN][1000 genomes]
rs1057390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11888566	0.91[EUR][1000 genomes]
rs11897897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11899172	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899329	0.91[EUR][1000 genomes]
rs1259699	0.82[CEU][hapmap];0.89[MEX][hapmap]
rs1259700	0.82[CEU][hapmap];0.86[AMR][1000 genomes]
rs12617780	0.86[ASN][1000 genomes]
rs13010749	0.91[EUR][1000 genomes]
rs13385546	0.82[ASN][1000 genomes]
rs13389400	0.89[ASN][1000 genomes]
rs13391882	0.93[ASN][1000 genomes]
rs13415155	0.93[ASN][1000 genomes]
rs13418028	0.83[ASN][1000 genomes]
rs1370375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1370377	1.00[JPT][hapmap]
rs1454317	0.89[ASN][1000 genomes]
rs1595329	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16841092	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs16841231	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs16841233	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs16841234	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16841242	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs1869534	0.93[ASN][1000 genomes]
rs1869535	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898436	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3856350	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4234089	0.85[CEU][hapmap]
rs4462735	0.94[ASW][hapmap];0.85[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs4558530	0.82[ASN][1000 genomes]
rs56875378	0.86[ASN][1000 genomes]
rs57164492	0.86[ASN][1000 genomes]
rs58644588	0.86[ASN][1000 genomes]
rs60916150	0.82[ASN][1000 genomes]
rs61195726	0.82[ASN][1000 genomes]
rs6713477	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6716615	0.82[CEU][hapmap];0.89[MEX][hapmap]
rs6717082	0.82[CEU][hapmap]
rs6721780	1.00[JPT][hapmap]
rs6725932	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6732373	0.86[ASN][1000 genomes]
rs6752329	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981036	0.82[ASN][1000 genomes]
rs7583022	0.94[ASW][hapmap];0.85[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[ASN][1000 genomes]
rs7605626	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9288394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs959660	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs962595	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9646839	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7595880	PIKFYVE	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209397200-209398200	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links