Variant report

Variant	rs11899172
Chromosome Location	chr2:209390348-209390349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10172724	0.89[ASN][1000 genomes]
rs10172914	0.89[ASN][1000 genomes]
rs10182685	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10190717	0.83[ASN][1000 genomes]
rs10197496	0.89[ASN][1000 genomes]
rs10210510	0.82[ASN][1000 genomes]
rs10497902	0.80[ASN][1000 genomes]
rs1057390	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11888566	0.88[EUR][1000 genomes]
rs11897897	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11899329	0.88[EUR][1000 genomes]
rs1259700	0.86[AMR][1000 genomes]
rs12617780	0.86[ASN][1000 genomes]
rs13010749	0.88[EUR][1000 genomes]
rs13385546	0.82[ASN][1000 genomes]
rs13389400	0.89[ASN][1000 genomes]
rs13391882	0.93[ASN][1000 genomes]
rs13415155	0.93[ASN][1000 genomes]
rs13418028	0.83[ASN][1000 genomes]
rs1370375	0.82[ASN][1000 genomes]
rs1454317	0.89[ASN][1000 genomes]
rs1869534	0.93[ASN][1000 genomes]
rs1869535	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4558530	0.82[ASN][1000 genomes]
rs56875378	0.86[ASN][1000 genomes]
rs57164492	0.86[ASN][1000 genomes]
rs58644588	0.86[ASN][1000 genomes]
rs60916150	0.82[ASN][1000 genomes]
rs61195726	0.82[ASN][1000 genomes]
rs6732373	0.86[ASN][1000 genomes]
rs6752329	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981036	0.82[ASN][1000 genomes]
rs7583022	0.86[ASN][1000 genomes]
rs7595880	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605626	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9288394	0.96[ASN][1000 genomes]
rs962595	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961004	chr2:209375664-209393273	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209389800-209390400	Enhancers	H9 Cell Line	embryonic stem cell

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