Variant report

Variant	rs9288394
Chromosome Location	chr2:209408838-209408839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:209329724..209332689-chr2:209407248..209409868,2	K562	blood:
2	chr2:209405990..209410694-chr2:209410728..209415214,7	K562	blood:
3	chr2:209406410..209410199-chr2:209429309..209432294,3	K562	blood:
4	chr2:209405403..209410609-chr2:209410620..209413858,6	K562	blood:
5	chr2:209403578..209406285-chr2:209407356..209409474,2	K562	blood:

Variant related genes	Relation type
ENSG00000227430	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10172724	0.93[ASN][1000 genomes]
rs10172914	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs10182087	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10182685	0.86[ASN][1000 genomes]
rs10197496	0.93[ASN][1000 genomes]
rs10208191	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10208295	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10210510	0.86[ASN][1000 genomes]
rs10497902	0.86[CHB][hapmap]
rs1057390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11897897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11899172	0.96[ASN][1000 genomes]
rs12617780	0.82[ASN][1000 genomes]
rs13385546	0.86[ASN][1000 genomes]
rs13389400	0.93[ASN][1000 genomes]
rs13391882	0.96[ASN][1000 genomes]
rs13415155	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13418028	0.86[ASN][1000 genomes]
rs1370375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1370377	1.00[JPT][hapmap]
rs1454317	0.93[ASN][1000 genomes]
rs1595329	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16841092	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16841231	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16841233	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16841234	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16841242	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1869534	0.96[ASN][1000 genomes]
rs1869535	0.96[ASN][1000 genomes]
rs1898436	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3856350	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4462735	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4558530	0.86[ASN][1000 genomes]
rs56875378	0.89[ASN][1000 genomes]
rs57164492	0.89[ASN][1000 genomes]
rs58644588	0.89[ASN][1000 genomes]
rs60916150	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61195726	0.86[ASN][1000 genomes]
rs6721780	1.00[JPT][hapmap]
rs6725932	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6732373	0.82[ASN][1000 genomes]
rs6752329	0.96[ASN][1000 genomes]
rs72981036	0.86[ASN][1000 genomes]
rs7583022	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7595880	0.96[ASN][1000 genomes]
rs7605626	0.86[ASN][1000 genomes]
rs959660	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs962595	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9646839	0.88[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209405800-209409000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:209406000-209410800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:209407800-209410200	Weak transcription	Stomach Mucosa	stomach
4	chr2:209407800-209410600	Active TSS	Fetal Kidney	kidney
5	chr2:209407800-209411400	Active TSS	K562	blood
6	chr2:209407800-209414400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:209408400-209409000	Active TSS	Pancreatic Islets	Pancreatic Islet

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