Variant report
Variant | rs1370377 |
---|---|
Chromosome Location | chr2:209285774-209285775 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10172914 | 0.82[CHB][hapmap] |
rs10175739 | 1.00[JPT][hapmap] |
rs10180707 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10182087 | 1.00[JPT][hapmap] |
rs10186531 | 1.00[JPT][hapmap] |
rs10208191 | 1.00[JPT][hapmap] |
rs10208295 | 1.00[JPT][hapmap] |
rs10210393 | 1.00[JPT][hapmap] |
rs10497899 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10497902 | 0.82[CHB][hapmap] |
rs1057390 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs10932256 | 1.00[JPT][hapmap] |
rs10932259 | 1.00[JPT][hapmap] |
rs11897897 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs11899172 | 0.82[ASN][1000 genomes] |
rs12617780 | 0.96[ASN][1000 genomes] |
rs12623816 | 1.00[JPT][hapmap] |
rs12694109 | 1.00[JPT][hapmap] |
rs12694111 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13391882 | 0.89[ASN][1000 genomes] |
rs13415155 | 0.82[ASN][1000 genomes] |
rs1370375 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1437414 | 1.00[JPT][hapmap] |
rs1595329 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs16840864 | 1.00[JPT][hapmap] |
rs16841092 | 1.00[JPT][hapmap] |
rs16841231 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
rs16841233 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs16841234 | 1.00[JPT][hapmap] |
rs16841242 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1866044 | 1.00[JPT][hapmap] |
rs1866045 | 1.00[JPT][hapmap] |
rs1869534 | 0.89[ASN][1000 genomes] |
rs1869535 | 0.82[ASN][1000 genomes] |
rs1898435 | 0.89[ASN][1000 genomes] |
rs1898436 | 1.00[JPT][hapmap] |
rs2363468 | 1.00[JPT][hapmap] |
rs3856350 | 1.00[JPT][hapmap] |
rs4462735 | 1.00[JPT][hapmap] |
rs4558530 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4673395 | 1.00[JPT][hapmap] |
rs4675748 | 1.00[JPT][hapmap] |
rs4675750 | 1.00[JPT][hapmap] |
rs4675751 | 1.00[JPT][hapmap] |
rs56875378 | 0.82[ASN][1000 genomes] |
rs57164492 | 0.82[ASN][1000 genomes] |
rs58644588 | 0.82[ASN][1000 genomes] |
rs60916150 | 1.00[ASN][1000 genomes] |
rs61195726 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6713477 | 1.00[JPT][hapmap] |
rs6721780 | 1.00[JPT][hapmap] |
rs6725548 | 0.89[ASN][1000 genomes] |
rs6725932 | 1.00[JPT][hapmap] |
rs6742461 | 1.00[JPT][hapmap] |
rs6752329 | 0.82[ASN][1000 genomes] |
rs7583022 | 1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs7595880 | 0.82[ASN][1000 genomes] |
rs920218 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs9288394 | 1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs959660 | 1.00[JPT][hapmap] |
rs962595 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9646839 | 1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv534496 | chr2:208814372-209302791 | Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
2 | nsv584297 | chr2:209020181-209316760 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
No data |