Variant report

Variant	rs10497899
Chromosome Location	chr2:209248247-209248248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10172914	0.83[CHD][hapmap]
rs10175739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10180707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10186531	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs10208191	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs10208295	1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs10210393	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1057390	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10932256	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10932259	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs11897897	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12617780	0.82[ASN][1000 genomes]
rs12623816	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs12694109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12694111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392540	0.86[CHB][hapmap]
rs1370375	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1370377	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1437414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1469941	0.85[AMR][1000 genomes]
rs1595329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16840798	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16840864	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16840910	0.85[AMR][1000 genomes]
rs16840936	0.85[AMR][1000 genomes]
rs16841092	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap]
rs16841231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs16841233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16841234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16841242	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1866044	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs1866045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1898435	0.89[ASN][1000 genomes]
rs1898436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2363468	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs3856350	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4462735	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4558530	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4673395	1.00[JPT][hapmap]
rs4675748	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4675750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4675751	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57553077	0.85[AMR][1000 genomes]
rs57797425	0.85[AMR][1000 genomes]
rs59149007	0.85[AMR][1000 genomes]
rs60916150	0.86[ASN][1000 genomes]
rs61195726	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6713477	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6721780	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs6725548	0.89[ASN][1000 genomes]
rs6725932	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs6742461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7583022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs920218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288394	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs959660	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs962595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9646839	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv437315	chr2:209204714-209249613	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2760598	chr2:209237587-209248803	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv963971	chr2:209245277-209250643	Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv962520	chr2:209245277-209253106	Weak transcription Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209245600-209249400	Weak transcription	Pancreas	Pancrea

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