Variant report

Variant	rs16841242
Chromosome Location	chr2:209333414-209333415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr2:209333399-209333506	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000227430	TF binding region
ENSG00000231896	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10172914	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs10175739	0.85[CHB][hapmap]
rs10180707	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10182087	0.86[CHB][hapmap]
rs10186531	0.88[CHB][hapmap];0.81[GIH][hapmap]
rs10208191	0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs10208295	0.88[CHB][hapmap];0.90[GIH][hapmap]
rs10210393	0.88[CHB][hapmap]
rs10497899	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10497902	0.86[CHB][hapmap]
rs1057390	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10932256	0.88[CHB][hapmap]
rs10932259	0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs11897897	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12617780	0.93[ASN][1000 genomes]
rs12623816	0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs12694109	0.88[CHB][hapmap]
rs12694111	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13391882	0.86[ASN][1000 genomes]
rs1370375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370377	1.00[CEU][hapmap]
rs1437414	0.88[CHB][hapmap]
rs1595329	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs16840864	0.88[CHB][hapmap]
rs16841092	0.88[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap]
rs16841231	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16841233	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap]
rs16841234	0.85[CHB][hapmap]
rs1866044	0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs1866045	0.88[CHB][hapmap]
rs1869534	0.86[ASN][1000 genomes]
rs1898435	0.86[ASN][1000 genomes]
rs1898436	0.88[CHB][hapmap]
rs2363468	0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs3856350	0.88[CHB][hapmap]
rs4462735	0.88[CHB][hapmap]
rs4558530	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4675748	0.88[CHB][hapmap]
rs4675750	0.88[CHB][hapmap]
rs4675751	0.88[CHB][hapmap]
rs60916150	0.96[ASN][1000 genomes]
rs61195726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6713477	0.88[CHB][hapmap]
rs6725548	0.86[ASN][1000 genomes]
rs6725932	0.88[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap]
rs6742461	0.88[CHB][hapmap]
rs7583022	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs920218	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9288394	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs959660	0.88[CHB][hapmap]
rs962595	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9646839	0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209331400-209342000	Weak transcription	Pancreas	Pancrea
2	chr2:209333400-209334600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links