Variant report
| Variant | rs4234089 |
|---|---|
| Chromosome Location | chr2:209291444-209291445 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10180707 | 0.82[ASN][1000 genomes] |
| rs10182087 | 1.00[CEU][hapmap] |
| rs10206991 | 0.90[EUR][1000 genomes] |
| rs10497899 | 0.82[ASN][1000 genomes] |
| rs1057390 | 0.85[CEU][hapmap];0.96[ASN][1000 genomes] |
| rs11897777 | 0.91[EUR][1000 genomes] |
| rs11897897 | 0.85[CEU][hapmap];0.96[ASN][1000 genomes] |
| rs11899172 | 0.86[ASN][1000 genomes] |
| rs12617780 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12694111 | 0.82[ASN][1000 genomes] |
| rs12991283 | 0.87[CEU][hapmap] |
| rs13000248 | 0.87[CEU][hapmap] |
| rs13391882 | 0.86[ASN][1000 genomes] |
| rs13397965 | 0.91[EUR][1000 genomes] |
| rs1370375 | 0.96[ASN][1000 genomes] |
| rs16841242 | 0.93[ASN][1000 genomes] |
| rs1869534 | 0.86[ASN][1000 genomes] |
| rs1869535 | 0.86[ASN][1000 genomes] |
| rs1898435 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1898436 | 0.87[CEU][hapmap] |
| rs1898437 | 0.96[AMR][1000 genomes] |
| rs2304545 | 0.82[AMR][1000 genomes] |
| rs34259292 | 0.83[EUR][1000 genomes] |
| rs35293936 | 0.85[CEU][hapmap] |
| rs3856350 | 1.00[CEU][hapmap] |
| rs4462735 | 1.00[CEU][hapmap] |
| rs4558530 | 0.96[ASN][1000 genomes] |
| rs4675761 | 0.89[AMR][1000 genomes] |
| rs60916150 | 0.96[ASN][1000 genomes] |
| rs61195726 | 0.96[ASN][1000 genomes] |
| rs6725548 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6752329 | 0.86[ASN][1000 genomes] |
| rs7583022 | 1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7595880 | 0.86[ASN][1000 genomes] |
| rs920218 | 0.82[ASN][1000 genomes] |
| rs9288394 | 0.82[ASN][1000 genomes] |
| rs959660 | 1.00[CEU][hapmap] |
| rs962595 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534496 | chr2:208814372-209302791 | Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv584297 | chr2:209020181-209316760 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
