Variant report

Variant	rs11897777
Chromosome Location	chr2:209264186-209264187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10182087	0.85[CEU][hapmap]
rs10186350	0.94[YRI][hapmap]
rs10193961	1.00[ASN][1000 genomes]
rs10206991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497901	0.82[CEU][hapmap]
rs1080646	1.00[ASN][1000 genomes]
rs11538998	1.00[CHD][hapmap]
rs11885913	1.00[CHD][hapmap]
rs11891163	0.88[AMR][1000 genomes]
rs11895188	1.00[CHD][hapmap]
rs11902124	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12475932	1.00[CHD][hapmap];0.81[MEX][hapmap]
rs1259699	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1259700	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs12617780	0.91[EUR][1000 genomes]
rs12991283	1.00[CEU][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes]
rs12998277	0.88[AMR][1000 genomes]
rs13000248	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13395035	0.88[AMR][1000 genomes]
rs13397965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400356	0.88[AMR][1000 genomes]
rs1347664	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs1437413	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs16841224	0.82[CEU][hapmap];0.88[MEX][hapmap]
rs16841236	1.00[CHD][hapmap]
rs16841239	1.00[ASN][1000 genomes]
rs16841294	1.00[ASN][1000 genomes]
rs17700235	1.00[CHD][hapmap]
rs17718694	1.00[ASN][1000 genomes]
rs1816612	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs1866046	1.00[CHD][hapmap]
rs1898435	0.91[EUR][1000 genomes]
rs1898436	1.00[CEU][hapmap]
rs28885800	0.88[AMR][1000 genomes]
rs34259292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35217101	0.88[AMR][1000 genomes]
rs35293936	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes]
rs3856350	0.85[CEU][hapmap]
rs4234089	0.85[CEU][hapmap]
rs4462735	0.85[CEU][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs4675748	0.81[TSI][hapmap]
rs61082488	1.00[ASN][1000 genomes]
rs61193569	1.00[ASN][1000 genomes]
rs6435435	1.00[CHD][hapmap]
rs66521274	1.00[ASN][1000 genomes]
rs66700780	1.00[ASN][1000 genomes]
rs6716615	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs67168689	1.00[ASN][1000 genomes]
rs6717082	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6725548	0.93[EUR][1000 genomes]
rs6728530	0.85[YRI][hapmap]
rs67393765	1.00[ASN][1000 genomes]
rs67660353	0.88[AMR][1000 genomes]
rs67757182	1.00[ASN][1000 genomes]
rs67984155	1.00[ASN][1000 genomes]
rs68112042	1.00[ASN][1000 genomes]
rs72981015	1.00[ASN][1000 genomes]
rs72981030	1.00[ASN][1000 genomes]
rs72981046	1.00[ASN][1000 genomes]
rs72981047	1.00[ASN][1000 genomes]
rs72986744	1.00[ASN][1000 genomes]
rs7563597	1.00[ASN][1000 genomes]
rs7570304	1.00[ASN][1000 genomes]
rs7583022	0.85[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.93[EUR][1000 genomes]
rs7586219	1.00[ASN][1000 genomes]
rs7608913	1.00[ASN][1000 genomes]
rs959660	0.85[CEU][hapmap]
rs999890	1.00[CHD][hapmap];0.92[GIH][hapmap];0.90[TSI][hapmap]
rs999891	1.00[CHD][hapmap];0.92[GIH][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11897777	PIKFYVE	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209264000-209264400	Enhancers	Pancreas	Pancrea

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