Variant report

Variant	rs6717082
Chromosome Location	chr2:209357870-209357871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209356910..209360822-chr2:209361905..209365197,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10165447	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs10193961	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206991	1.00[ASN][1000 genomes]
rs1057390	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1080646	1.00[ASN][1000 genomes]
rs11538998	1.00[CHD][hapmap]
rs11885913	1.00[CHD][hapmap]
rs11897777	1.00[ASN][1000 genomes]
rs11897897	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs11902124	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1259699	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1259700	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12991283	0.82[CEU][hapmap]
rs13000248	0.82[CEU][hapmap]
rs13397965	1.00[ASN][1000 genomes]
rs13400148	0.86[AFR][1000 genomes]
rs1347664	1.00[CHD][hapmap]
rs1370373	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs1437413	1.00[CHD][hapmap]
rs16841236	1.00[CHD][hapmap]
rs16841239	1.00[ASN][1000 genomes]
rs16841294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17700235	1.00[CHD][hapmap]
rs17718694	1.00[ASN][1000 genomes]
rs1816612	1.00[CHD][hapmap]
rs1866046	1.00[CHD][hapmap]
rs1869535	0.83[EUR][1000 genomes]
rs1898436	0.82[CEU][hapmap]
rs34259292	1.00[ASN][1000 genomes]
rs35293936	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs61082488	1.00[ASN][1000 genomes]
rs61193569	1.00[ASN][1000 genomes]
rs66521274	1.00[ASN][1000 genomes]
rs66700780	1.00[ASN][1000 genomes]
rs6716615	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67168689	1.00[ASN][1000 genomes]
rs67393765	1.00[ASN][1000 genomes]
rs67757182	1.00[ASN][1000 genomes]
rs67984155	1.00[ASN][1000 genomes]
rs68112042	1.00[ASN][1000 genomes]
rs72981015	1.00[ASN][1000 genomes]
rs72981030	1.00[ASN][1000 genomes]
rs72981046	1.00[ASN][1000 genomes]
rs72981047	1.00[ASN][1000 genomes]
rs72986744	1.00[ASN][1000 genomes]
rs7563597	1.00[ASN][1000 genomes]
rs7570304	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586219	1.00[ASN][1000 genomes]
rs7608913	1.00[ASN][1000 genomes]
rs999890	1.00[CHD][hapmap]
rs999891	1.00[CHD][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209355200-209361000	Weak transcription	Stomach Mucosa	stomach
2	chr2:209355200-209366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:209356600-209361000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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