Variant report

Variant	rs1816612
Chromosome Location	chr2:209296070-209296071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10193961	1.00[ASN][1000 genomes]
rs10206991	1.00[ASN][1000 genomes]
rs10497901	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1080646	1.00[ASN][1000 genomes]
rs11538998	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs11885913	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs11891163	0.84[AMR][1000 genomes]
rs11895188	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs11897777	1.00[ASN][1000 genomes]
rs11902124	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12475932	1.00[CHD][hapmap]
rs1259699	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1259700	1.00[ASN][1000 genomes]
rs12991283	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs12998277	0.84[AMR][1000 genomes]
rs13000248	0.82[CEU][hapmap]
rs13395035	0.84[AMR][1000 genomes]
rs13397965	1.00[ASN][1000 genomes]
rs13400356	0.84[AMR][1000 genomes]
rs1347664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1437413	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16841224	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16841236	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16841239	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841294	1.00[ASN][1000 genomes]
rs17699982	0.80[AMR][1000 genomes]
rs17700235	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs17718694	1.00[ASN][1000 genomes]
rs1866046	1.00[CHD][hapmap];0.90[GIH][hapmap]
rs1898436	0.82[CEU][hapmap]
rs28885800	0.84[AMR][1000 genomes]
rs34259292	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35217101	0.84[AMR][1000 genomes]
rs35293936	0.82[CEU][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes]
rs61082488	1.00[ASN][1000 genomes]
rs61193569	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6435435	1.00[CHD][hapmap]
rs66521274	1.00[ASN][1000 genomes]
rs66700780	1.00[ASN][1000 genomes]
rs6716615	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs67168689	1.00[ASN][1000 genomes]
rs6717082	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs67393765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67660353	0.84[AMR][1000 genomes]
rs67757182	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67984155	1.00[ASN][1000 genomes]
rs68112042	1.00[ASN][1000 genomes]
rs72981015	1.00[ASN][1000 genomes]
rs72981030	1.00[ASN][1000 genomes]
rs72981046	1.00[ASN][1000 genomes]
rs72981047	1.00[ASN][1000 genomes]
rs72986744	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563597	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7564720	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs7570304	1.00[ASN][1000 genomes]
rs7586219	1.00[ASN][1000 genomes]
rs7608913	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999890	1.00[CHD][hapmap]
rs999891	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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