Variant report

Variant	rs16841294
Chromosome Location	chr2:209353800-209353801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr2:209353679-209354443	K562	blood:	n/a	chr2:209354182-209354202 chr2:209354112-209354132
2	GATA2	chr2:209353404-209354292	K562	blood:	n/a	chr2:209354123-209354130 chr2:209354116-209354137 chr2:209354112-209354129 chr2:209354121-209354130 chr2:209354121-209354131
3	CHD2	chr2:209353748-209354166	K562	blood:	n/a	n/a
4	RCOR1	chr2:209353400-209354747	K562	blood:	n/a	n/a
5	NR2F2	chr2:209353729-209354450	K562	blood:	n/a	chr2:209354000-209354015
6	HMGN3	chr2:209353720-209354354	K562	blood:	n/a	n/a
7	ZNF384	chr2:209353502-209354352	K562	blood:	n/a	n/a
8	SMC3	chr2:209353793-209353903	K562	blood:	n/a	n/a
9	JUND	chr2:209353454-209354422	K562	blood:	n/a	chr2:209354108-209354122
10	MXI1	chr2:209353789-209354191	K562	blood:	n/a	n/a
11	MYC	chr2:209353569-209354517	K562	blood:	n/a	n/a
12	IRF1	chr2:209353622-209354827	K562	blood:	n/a	chr2:209354200-209354212 chr2:209354197-209354211 chr2:209353628-209353642
13	TBL1XR1	chr2:209353621-209354613	K562	blood:	n/a	n/a
14	TRIM28	chr2:209353785-209354400	K562	blood:	n/a	n/a
15	TAL1	chr2:209353484-209354707	K562	blood:	n/a	n/a
16	GATA1	chr2:209353349-209354856	K562	blood:	n/a	chr2:209354123-209354130 chr2:209354116-209354137 chr2:209354112-209354129 chr2:209354121-209354130 chr2:209354121-209354131
17	MYC	chr2:209353606-209354841	K562	blood:	n/a	n/a
18	GATA1	chr2:209353361-209354612	PBDE	blood:	n/a	chr2:209354123-209354130 chr2:209354116-209354137 chr2:209354112-209354129 chr2:209354121-209354130 chr2:209354121-209354131
19	POLR2A	chr2:209353501-209354650	K562	blood:	n/a	n/a

Variant related genes	Relation type
PTH2R	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10165447	0.92[AFR][1000 genomes]
rs10193961	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206991	1.00[ASN][1000 genomes]
rs1057390	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1080646	1.00[ASN][1000 genomes]
rs11897777	1.00[ASN][1000 genomes]
rs11897897	0.89[EUR][1000 genomes]
rs11902124	1.00[ASN][1000 genomes]
rs1259699	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1259700	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13397965	1.00[ASN][1000 genomes]
rs13400148	0.87[AFR][1000 genomes]
rs1370373	0.89[AFR][1000 genomes]
rs16841239	1.00[ASN][1000 genomes]
rs17718694	1.00[ASN][1000 genomes]
rs1869535	0.83[EUR][1000 genomes]
rs34259292	1.00[ASN][1000 genomes]
rs61082488	1.00[ASN][1000 genomes]
rs61193569	1.00[ASN][1000 genomes]
rs66521274	1.00[ASN][1000 genomes]
rs66700780	1.00[ASN][1000 genomes]
rs6716615	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67168689	1.00[ASN][1000 genomes]
rs6717082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67393765	1.00[ASN][1000 genomes]
rs67757182	1.00[ASN][1000 genomes]
rs67984155	1.00[ASN][1000 genomes]
rs68112042	1.00[ASN][1000 genomes]
rs72981015	1.00[ASN][1000 genomes]
rs72981030	1.00[ASN][1000 genomes]
rs72981046	1.00[ASN][1000 genomes]
rs72981047	1.00[ASN][1000 genomes]
rs72986744	1.00[ASN][1000 genomes]
rs7563597	1.00[ASN][1000 genomes]
rs7570304	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586219	1.00[ASN][1000 genomes]
rs7608913	1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209352800-209354000	Enhancers	Brain Hippocampus Middle	brain
2	chr2:209353200-209356600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:209353400-209354000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr2:209353400-209354600	Enhancers	Pancreas	Pancrea
5	chr2:209353400-209355000	Enhancers	Fetal Intestine Large	intestine
6	chr2:209353600-209353800	Active TSS	Brain Anterior Caudate	brain
7	chr2:209353600-209353800	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr2:209353600-209354000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr2:209353600-209354000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:209353600-209354000	Enhancers	Brain Cingulate Gyrus	brain
11	chr2:209353600-209354000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr2:209353600-209354000	Enhancers	Brain Substantia Nigra	brain
13	chr2:209353600-209354000	Active TSS	Fetal Brain Female	brain
14	chr2:209353600-209354000	Flanking Active TSS	K562	blood
15	chr2:209353600-209354800	Enhancers	Duodenum Mucosa	Duodenum
16	chr2:209353600-209355600	Enhancers	Fetal Lung	lung
17	chr2:209353800-209354000	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr2:209353800-209354000	Active TSS	Brain Germinal Matrix	brain
19	chr2:209353800-209354200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:209353800-209354600	Enhancers	Fetal Kidney	kidney
21	chr2:209353800-209354800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr2:209353800-209355200	Enhancers	Stomach Mucosa	stomach

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