Variant report

Variant	rs67258954
Chromosome Location	chr19:37152146-37152147
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1035777	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10402182	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10403456	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10407919	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11084861	0.88[ASN][1000 genomes]
rs11666769	0.82[ASN][1000 genomes]
rs11667894	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11668432	0.84[ASN][1000 genomes]
rs11668689	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11669816	0.89[ASN][1000 genomes]
rs11670914	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11671382	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11672098	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12608459	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12608512	0.86[ASN][1000 genomes]
rs12610555	0.83[ASN][1000 genomes]
rs12610572	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1357879	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1464830	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1464831	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1525133	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1673082	0.80[ASN][1000 genomes]
rs17272386	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1985980	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2052728	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2162296	0.84[ASN][1000 genomes]
rs2194976	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2912399	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2912408	0.81[ASN][1000 genomes]
rs2912412	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2912440	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2912442	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2912443	0.84[ASN][1000 genomes]
rs2912444	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2912446	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2945964	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2967427	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2967429	0.84[ASN][1000 genomes]
rs2967436	0.89[ASN][1000 genomes]
rs2967437	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2967438	0.81[ASN][1000 genomes]
rs2967439	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2967440	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2967442	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2967459	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2967461	0.81[ASN][1000 genomes]
rs2967463	0.80[ASN][1000 genomes]
rs2967464	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3096620	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3096637	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3108593	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3108605	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35299345	0.84[ASN][1000 genomes]
rs4806338	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4806339	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4806348	0.86[EUR][1000 genomes]
rs4806349	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55940011	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55965207	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60213885	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60297398	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61457535	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61628442	0.82[ASN][1000 genomes]
rs6510551	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66717711	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66783290	0.89[ASN][1000 genomes]
rs67995015	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68012004	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7246216	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7251805	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73609113	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7507224	0.88[ASN][1000 genomes]
rs8100381	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8108985	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs826987	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3492171	chr19:37122012-37190210	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
8	esv3492172	chr19:37122562-37190060	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
9	esv3492173	chr19:37122562-37190060	Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
10	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv3420176	chr19:37130161-37207917	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
13	nsv1061250	chr19:37134068-37188771	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a
14	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37106800-37156200	ZNF genes & repeats	Liver	Liver
3	chr19:37107000-37152400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:37110400-37152600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:37124800-37155600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:37126200-37156200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:37128800-37156200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:37134600-37157000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:37135200-37156200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr19:37135800-37156200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr19:37135800-37156400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr19:37136000-37152200	ZNF genes & repeats	Fetal Brain Female	brain
13	chr19:37136000-37152400	ZNF genes & repeats	A549	lung
14	chr19:37136400-37152200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
15	chr19:37142600-37156000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr19:37143400-37154600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr19:37143600-37152200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
18	chr19:37143600-37156800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr19:37144200-37152200	ZNF genes & repeats	Small Intestine	intestine
20	chr19:37144400-37156000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr19:37145200-37156600	Weak transcription	Fetal Heart	heart
22	chr19:37145600-37153400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:37145600-37156600	Weak transcription	NHLF	lung
24	chr19:37145600-37156800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:37147400-37154200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr19:37147400-37156600	Weak transcription	NHEK	skin
27	chr19:37147600-37156600	Weak transcription	HMEC	breast
28	chr19:37148000-37156800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr19:37148200-37153000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:37148600-37154400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr19:37148600-37155200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr19:37148800-37152200	ZNF genes & repeats	Brain Substantia Nigra	brain
33	chr19:37148800-37152400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
34	chr19:37149200-37156800	Weak transcription	Stomach Mucosa	stomach
35	chr19:37149600-37156800	Weak transcription	Fetal Thymus	thymus
36	chr19:37149800-37155600	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr19:37150000-37152400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr19:37150000-37153600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr19:37150000-37153800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:37150000-37156800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr19:37150200-37152200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr19:37150200-37152200	Strong transcription	Brain Hippocampus Middle	brain
43	chr19:37150200-37152200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:37150200-37153000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr19:37150200-37153000	Strong transcription	Fetal Lung	lung
46	chr19:37150200-37153800	Weak transcription	NHDF-Ad	bronchial
47	chr19:37150200-37154000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr19:37150200-37154200	Weak transcription	HUVEC	blood vessel
49	chr19:37150200-37154400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr19:37150200-37154600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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