Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10166052	0.85[CHB][hapmap];0.96[ASN][1000 genomes]
rs10206719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11678974	0.96[ASN][1000 genomes]
rs1482378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1505369	0.96[ASN][1000 genomes]
rs1505372	0.95[CEU][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs1505376	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17259208	0.86[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs17325821	0.90[TSI][hapmap]
rs17325842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1842767	0.96[ASN][1000 genomes]
rs1847671	0.98[ASN][1000 genomes]
rs2128318	0.96[ASN][1000 genomes]
rs2170529	1.00[CHB][hapmap];0.86[CHD][hapmap];0.96[ASN][1000 genomes]
rs2170530	0.83[YRI][hapmap]
rs2371576	0.96[ASN][1000 genomes]
rs2860080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4366846	0.90[ASN][1000 genomes]
rs6711080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6723878	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7570124	0.83[YRI][hapmap]
rs974968	0.86[CHB][hapmap]
rs985995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213312200-213320400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213315800-213317400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr2:213316600-213318200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:213316600-213318200	Enhancers	HepG2	liver
5	chr2:213317000-213317600	Weak transcription	Brain Substantia Nigra	brain
6	chr2:213317000-213318000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:213317200-213317400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:213317200-213317400	Flanking Active TSS	Fetal Heart	heart

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