Variant report

Variant	rs1505376
Chromosome Location	chr2:213303947-213303948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10166052	0.89[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10168850	0.89[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs10194811	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs10206719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11675580	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs11678974	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12694281	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13389790	0.89[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs13390934	0.96[CEU][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13430619	0.89[EUR][1000 genomes]
rs1354617	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1482378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1505369	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1546371	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17325842	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1842767	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1847671	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2047950	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2062930	1.00[CEU][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2101152	0.90[EUR][1000 genomes]
rs2128318	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2170529	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2220024	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2371576	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2860080	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4366846	0.90[ASN][1000 genomes]
rs55992489	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56009609	0.81[EUR][1000 genomes]
rs6435705	0.87[EUR][1000 genomes]
rs6711080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6723878	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[LWK][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6726147	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6731193	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6735807	0.96[CEU][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs974968	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs985995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	esv34076	chr2:213298576-213306627	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213302000-213306600	Weak transcription	Aorta	Aorta

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