Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10166052	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs10168850	0.80[CEU][hapmap]
rs10194811	0.81[CEU][hapmap]
rs11678974	0.80[EUR][1000 genomes]
rs13389790	0.80[CEU][hapmap]
rs13390934	0.89[CEU][hapmap]
rs1354617	0.92[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1505369	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs1505376	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1546371	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17325842	0.84[CEU][hapmap]
rs1847671	0.88[EUR][1000 genomes]
rs2047950	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2062930	0.92[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2128318	0.81[EUR][1000 genomes]
rs2170529	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2220024	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2371576	0.88[EUR][1000 genomes]
rs2860080	0.81[EUR][1000 genomes]
rs55992489	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56009609	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62186293	0.89[EUR][1000 genomes]
rs6723878	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs6731193	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs6735807	0.88[CEU][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes]
rs974968	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213312200-213320400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213312600-213315400	Enhancers	Fetal Heart	heart
3	chr2:213312600-213316000	Enhancers	HepG2	liver
4	chr2:213312800-213314200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:213313200-213316400	Weak transcription	Brain Substantia Nigra	brain
6	chr2:213313800-213315400	Enhancers	Fetal Kidney	kidney
7	chr2:213314000-213316400	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:213314000-213316600	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: