Variant report

Variant	rs6735807
Chromosome Location	chr2:213344157-213344158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213338459..213340893-chr2:213342035..213345641,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10166052	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs10168850	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10178687	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs10180614	1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[ASN][1000 genomes]
rs10194811	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11675580	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11678974	0.90[EUR][1000 genomes]
rs11894208	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs12694281	0.88[CEU][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes]
rs13015808	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs13389790	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13390934	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs13430619	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1354617	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1384290	0.88[ASN][1000 genomes]
rs1384291	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1505369	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1505372	1.00[CHB][hapmap]
rs1505376	0.96[CEU][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1546371	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs16848556	1.00[CHB][hapmap]
rs16848564	1.00[CHB][hapmap]
rs16848571	1.00[CHB][hapmap]
rs16848593	1.00[CHB][hapmap]
rs16848675	1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes]
rs17259208	1.00[CHB][hapmap]
rs17325821	1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs17325842	0.88[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs1842767	0.89[EUR][1000 genomes]
rs1847671	0.96[EUR][1000 genomes]
rs2047950	0.86[EUR][1000 genomes]
rs2062930	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2101152	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2128318	0.89[EUR][1000 genomes]
rs2170529	0.88[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs2220024	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2371576	0.96[EUR][1000 genomes]
rs2860080	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs55992489	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62186293	0.82[EUR][1000 genomes]
rs6435705	0.85[EUR][1000 genomes]
rs6723878	0.92[CEU][hapmap];0.97[EUR][1000 genomes]
rs6731193	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs6752299	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs73063184	0.81[ASN][1000 genomes]
rs73063189	0.81[ASN][1000 genomes]
rs73067074	0.81[ASN][1000 genomes]
rs9283525	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs974968	0.92[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213342800-213345400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:213343400-213348000	Enhancers	Fetal Heart	heart
3	chr2:213343600-213345800	Enhancers	Fetal Brain Female	brain
4	chr2:213344000-213346200	Enhancers	Fetal Brain Male	brain

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