Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10153722	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10178298	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10178687	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10180614	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190653	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10206719	0.84[EUR][1000 genomes]
rs13411815	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1354617	0.83[ASN][1000 genomes]
rs1384291	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552161	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs16848675	0.91[ASN][1000 genomes]
rs16848707	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2062930	0.83[ASN][1000 genomes]
rs4366846	0.82[EUR][1000 genomes]
rs55992489	0.83[ASN][1000 genomes]
rs6735807	0.88[ASN][1000 genomes]
rs6752299	0.91[ASN][1000 genomes]
rs73063184	0.91[ASN][1000 genomes]
rs73063189	0.91[ASN][1000 genomes]
rs73067074	0.91[ASN][1000 genomes]
rs73079459	0.83[ASN][1000 genomes]
rs73079470	0.83[ASN][1000 genomes]
rs9283525	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985995	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1008463	chr2:213356335-213388695	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv584425	chr2:213370272-213373521	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1014479	chr2:213370690-213413231	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213370400-213373800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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