Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10178687	0.91[ASN][1000 genomes]
rs10180614	0.91[ASN][1000 genomes]
rs1384290	0.91[ASN][1000 genomes]
rs1384291	0.91[ASN][1000 genomes]
rs16848675	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848705	0.88[AFR][1000 genomes]
rs16848714	0.88[AFR][1000 genomes]
rs16848717	0.87[AFR][1000 genomes]
rs16848720	0.88[AFR][1000 genomes]
rs2054616	0.92[AFR][1000 genomes]
rs2054618	0.92[AFR][1000 genomes]
rs2128319	0.92[AFR][1000 genomes]
rs59399497	0.88[AFR][1000 genomes]
rs59677351	0.88[AFR][1000 genomes]
rs59989514	0.83[AFR][1000 genomes]
rs6735807	0.81[ASN][1000 genomes]
rs6752299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063189	1.00[ASN][1000 genomes]
rs73067074	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73067093	0.92[AFR][1000 genomes]
rs73067101	0.92[AFR][1000 genomes]
rs73069012	0.88[AFR][1000 genomes]
rs73069015	0.88[AFR][1000 genomes]
rs73069020	0.88[AFR][1000 genomes]
rs73069023	0.88[AFR][1000 genomes]
rs73079459	0.97[EUR][1000 genomes]
rs73079470	0.97[EUR][1000 genomes]
rs7568478	0.87[AFR][1000 genomes]
rs9283525	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213345600-213350600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:213346800-213352400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:213349200-213352400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:213349400-213350400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:213349400-213350800	Enhancers	Brain Anterior Caudate	brain
6	chr2:213349400-213350800	Enhancers	Fetal Heart	heart
7	chr2:213349400-213351400	Enhancers	Brain Substantia Nigra	brain
8	chr2:213349800-213350400	Weak transcription	Psoas Muscle	Psoas
9	chr2:213349800-213350600	Weak transcription	Aorta	Aorta
10	chr2:213350000-213351000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:213350200-213352800	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:213350200-213353400	Weak transcription	Brain Cingulate Gyrus	brain

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