Variant report

Variant	rs13411815
Chromosome Location	chr2:213364214-213364215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10153722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10165364	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10172512	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10178298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10190653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10196652	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10497976	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11689233	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13382605	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13388843	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13392407	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13394464	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13401008	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13420607	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13422427	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1384290	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1482381	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1552161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1586045	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16848611	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16848707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16848787	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17260933	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17325381	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1813049	0.88[EUR][1000 genomes]
rs1813050	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1882352	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1921630	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1997470	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086612	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2101151	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2204853	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57473409	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57921759	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6715328	0.88[EUR][1000 genomes]
rs6733009	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7564771	0.83[EUR][1000 genomes]
rs7568763	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs972488	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs972489	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9808433	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs999946	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1008463	chr2:213356335-213388695	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213361400-213365800	Weak transcription	Fetal Heart	heart
2	chr2:213362400-213365600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213364200-213364400	Weak transcription	Brain Substantia Nigra	brain

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