Variant report

Variant	rs57921759
Chromosome Location	chr2:213317425-213317426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10153722	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10165364	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10172512	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10178298	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10190653	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10196652	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10497976	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11689233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11695241	0.81[EUR][1000 genomes]
rs13382605	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13388843	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13392407	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13394464	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13401008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13411815	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13420607	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13422427	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1482381	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1552161	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1586045	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16848611	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16848707	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16848787	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17260933	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17325381	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1813049	0.95[EUR][1000 genomes]
rs1813050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1882352	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1921630	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1997470	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2086612	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2101151	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2204853	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57473409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6710782	0.82[EUR][1000 genomes]
rs6715328	0.95[EUR][1000 genomes]
rs6733009	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7564771	0.85[EUR][1000 genomes]
rs7568763	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs972488	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs972489	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9808433	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs999946	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213312200-213320400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213316600-213318200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:213316600-213318200	Enhancers	HepG2	liver
4	chr2:213317000-213317600	Weak transcription	Brain Substantia Nigra	brain
5	chr2:213317000-213318000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:213317400-213318200	Enhancers	Fetal Heart	heart

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