Variant report

Variant	rs11695241
Chromosome Location	chr2:213317890-213317891
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10153722	0.86[CEU][hapmap]
rs10178298	0.81[CEU][hapmap]
rs10190653	0.86[CEU][hapmap]
rs10196652	0.86[CEU][hapmap]
rs10207963	0.97[ASN][1000 genomes]
rs10497976	0.81[CEU][hapmap]
rs11689233	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs13034755	1.00[JPT][hapmap]
rs13388843	0.86[CEU][hapmap]
rs13394464	0.86[CEU][hapmap]
rs13422701	0.94[ASN][1000 genomes]
rs1482381	0.86[CEU][hapmap]
rs1586045	0.86[CEU][hapmap]
rs16848583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16848584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16848707	0.92[CEU][hapmap]
rs16848787	0.92[CEU][hapmap]
rs17260933	0.86[CEU][hapmap]
rs17325381	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1813049	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813050	0.81[EUR][1000 genomes]
rs1882352	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1921630	0.86[CEU][hapmap]
rs1997470	0.86[CEU][hapmap]
rs2086612	0.86[CEU][hapmap]
rs2101151	0.85[CEU][hapmap]
rs2170529	0.86[YRI][hapmap]
rs2170530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2204853	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs4627509	1.00[CHB][hapmap]
rs57473409	0.81[EUR][1000 genomes]
rs57921759	0.81[EUR][1000 genomes]
rs6435706	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6710782	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6715328	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738011	1.00[CHB][hapmap]
rs6752016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6760968	0.97[ASN][1000 genomes]
rs73989006	0.97[ASN][1000 genomes]
rs73989011	0.97[ASN][1000 genomes]
rs73989012	0.97[ASN][1000 genomes]
rs73989013	0.97[ASN][1000 genomes]
rs7568763	0.86[CEU][hapmap]
rs7570124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7593163	0.97[ASN][1000 genomes]
rs7603379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs972488	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs972489	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs999946	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213312200-213320400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213316600-213318200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:213316600-213318200	Enhancers	HepG2	liver
4	chr2:213317000-213318000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:213317400-213318200	Enhancers	Fetal Heart	heart
6	chr2:213317600-213318200	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links