Variant report

Variant	rs6752016
Chromosome Location	chr2:213371066-213371067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213370671..213373168-chr2:213375734..213377389,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10207963	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11695241	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13034755	1.00[JPT][hapmap]
rs13422701	0.97[ASN][1000 genomes]
rs16848583	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1813049	0.97[ASN][1000 genomes]
rs2170530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4627509	1.00[CHB][hapmap]
rs6435706	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6710782	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6715328	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6738011	1.00[CHB][hapmap]
rs6760968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73989003	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73989006	1.00[ASN][1000 genomes]
rs73989011	1.00[ASN][1000 genomes]
rs73989012	1.00[ASN][1000 genomes]
rs73989013	1.00[ASN][1000 genomes]
rs7570124	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7593163	1.00[ASN][1000 genomes]
rs7603379	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1008463	chr2:213356335-213388695	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	esv3459971	chr2:213369556-213371444	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3459970	chr2:213370045-213371252	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3459972	chr2:213370045-213371252	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv584425	chr2:213370272-213373521	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1014479	chr2:213370690-213413231	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213367800-213372200	Weak transcription	Aorta	Aorta
2	chr2:213370400-213373800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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