Variant report

Variant	rs10497976
Chromosome Location	chr2:213343100-213343101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213338459..213340893-chr2:213342035..213345641,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10153722	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10165364	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10172512	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10178298	0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10178687	0.82[CEU][hapmap]
rs10180614	0.82[CEU][hapmap]
rs10190653	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10196652	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11689233	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11695241	0.81[CEU][hapmap]
rs13382605	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13388843	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13392407	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13394464	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13401008	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13411815	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13420607	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13422427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1384291	0.82[CEU][hapmap]
rs1482381	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1552161	0.81[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1586045	0.93[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16848611	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16848707	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16848787	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17260933	0.94[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17325381	0.93[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1813049	0.92[EUR][1000 genomes]
rs1813050	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1882351	0.83[AFR][1000 genomes]
rs1882352	0.94[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1921630	0.94[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1997470	0.94[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2086612	0.94[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2101151	0.93[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2204853	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57473409	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57921759	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6710782	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs6715328	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs6733009	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7564771	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs7568763	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9283525	0.82[CEU][hapmap]
rs972488	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs972489	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9808433	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs999946	0.94[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213342400-213343600	Weak transcription	Fetal Brain Female	brain
2	chr2:213342600-213343400	Weak transcription	Fetal Heart	heart
3	chr2:213342800-213344000	Weak transcription	Fetal Brain Male	brain
4	chr2:213342800-213345400	Weak transcription	Brain Cingulate Gyrus	brain

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