Variant report

Variant	rs13422427
Chromosome Location	chr2:213350603-213350604
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10153722	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10165364	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10172512	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10178298	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10190653	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10196652	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10497976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11689233	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13382605	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13388843	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13392407	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13394464	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13401008	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13411815	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13420607	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1482381	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1552161	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1586045	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16848611	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16848707	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16848787	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17260933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17325381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1813049	0.87[EUR][1000 genomes]
rs1813050	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1882351	0.83[AFR][1000 genomes]
rs1882352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1921630	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1997470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2086612	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2101151	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2204853	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57473409	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57921759	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6715328	0.87[EUR][1000 genomes]
rs6733009	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7564771	0.82[EUR][1000 genomes]
rs7568763	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs972488	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs972489	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9808433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs999946	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213346800-213352400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:213349200-213352400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:213349400-213350800	Enhancers	Brain Anterior Caudate	brain
4	chr2:213349400-213350800	Enhancers	Fetal Heart	heart
5	chr2:213349400-213351400	Enhancers	Brain Substantia Nigra	brain
6	chr2:213350000-213351000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:213350200-213352800	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:213350200-213353400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr2:213350600-213350800	Enhancers	Aorta	Aorta
10	chr2:213350600-213350800	Enhancers	Brain Angular Gyrus	brain
11	chr2:213350600-213350800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:213350600-213353400	Weak transcription	Psoas Muscle	Psoas

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