Variant report

Variant	rs10172512
Chromosome Location	chr2:213382873-213382874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213042144..213043012-chr2:213382544..213383068,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10153722	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10165364	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10178298	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10190653	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10196652	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10497976	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11689233	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13382605	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13388843	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13392407	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394464	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13401008	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13411815	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13420607	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13422427	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1482381	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1552161	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1586045	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16848611	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16848707	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16848787	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17260933	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17325381	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1813049	0.89[EUR][1000 genomes]
rs1813050	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1882351	1.00[AFR][1000 genomes]
rs1882352	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1921630	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1997470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2086612	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2101151	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2204853	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57473409	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57921759	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6715328	0.89[EUR][1000 genomes]
rs6733009	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7564771	0.84[EUR][1000 genomes]
rs7568763	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs972488	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs972489	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9808433	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs999946	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432024	chr2:213314899-213446726	Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1008463	chr2:213356335-213388695	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1014479	chr2:213370690-213413231	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213380800-213384400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213381200-213383000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:213381400-213384400	Enhancers	Fetal Heart	heart
4	chr2:213382600-213391800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links