Variant report

Variant	rs55992489
Chromosome Location	chr2:213310645-213310646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10166052	0.91[EUR][1000 genomes]
rs10168850	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10178687	0.83[ASN][1000 genomes]
rs10180614	0.83[ASN][1000 genomes]
rs10194811	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11675580	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11678974	0.91[EUR][1000 genomes]
rs12694281	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13015808	0.87[ASN][1000 genomes]
rs13389790	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13390934	0.86[EUR][1000 genomes]
rs13430619	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1354617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384290	0.83[ASN][1000 genomes]
rs1384291	0.83[ASN][1000 genomes]
rs1505369	0.98[EUR][1000 genomes]
rs1505372	0.88[ASN][1000 genomes]
rs1505376	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1546371	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16848553	0.81[ASN][1000 genomes]
rs16848556	0.91[ASN][1000 genomes]
rs16848564	0.91[ASN][1000 genomes]
rs16848571	0.91[ASN][1000 genomes]
rs16848593	0.95[ASN][1000 genomes]
rs17259208	0.95[ASN][1000 genomes]
rs17325821	0.87[ASN][1000 genomes]
rs17325842	0.91[EUR][1000 genomes]
rs1842767	0.90[EUR][1000 genomes]
rs1847671	0.99[EUR][1000 genomes]
rs2047950	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2062930	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101152	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2128318	0.91[EUR][1000 genomes]
rs2170529	0.91[EUR][1000 genomes]
rs2220024	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2371576	0.98[EUR][1000 genomes]
rs2860080	0.92[EUR][1000 genomes]
rs56009609	0.82[EUR][1000 genomes]
rs6435705	0.86[EUR][1000 genomes]
rs6723878	0.98[EUR][1000 genomes]
rs6731193	0.95[EUR][1000 genomes]
rs6735807	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73079459	1.00[ASN][1000 genomes]
rs73079470	1.00[ASN][1000 genomes]
rs7575120	0.95[ASN][1000 genomes]
rs9283525	0.83[ASN][1000 genomes]
rs974968	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213307200-213313800	Weak transcription	Fetal Kidney	kidney
2	chr2:213308000-213312600	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:213309400-213312800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:213310200-213312200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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