Variant report

Variant	rs16848556
Chromosome Location	chr2:213300321-213300322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10168850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10178687	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10180614	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10194811	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11675580	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11892049	1.00[JPT][hapmap]
rs13015808	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13021394	1.00[JPT][hapmap]
rs13021610	1.00[JPT][hapmap]
rs13389790	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs13430619	0.87[ASN][1000 genomes]
rs1354617	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1384291	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1394797	1.00[CEU][hapmap]
rs1505372	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16848495	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs16848525	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs16848530	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16848550	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16848553	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16848564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848571	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16848675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16848730	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17259208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17325821	1.00[JPT][hapmap]
rs17329875	1.00[JPT][hapmap]
rs2062930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2101152	0.87[ASN][1000 genomes]
rs2220024	0.87[ASN][1000 genomes]
rs55992489	0.91[ASN][1000 genomes]
rs6735807	1.00[CHB][hapmap]
rs6752299	1.00[CHB][hapmap]
rs73063189	0.95[EUR][1000 genomes]
rs73079459	0.91[ASN][1000 genomes]
rs73079470	0.91[ASN][1000 genomes]
rs7569142	1.00[JPT][hapmap]
rs7575120	0.87[ASN][1000 genomes]
rs9283525	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	esv34076	chr2:213298576-213306627	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213299400-213302200	Weak transcription	Fetal Heart	heart

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