Variant report

Variant	rs16848525
Chromosome Location	chr2:213287978-213287979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213280702..213283541-chr2:213286415..213289040,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10153722	1.00[CHB][hapmap]
rs10497972	1.00[CHB][hapmap]
rs11892564	1.00[CHB][hapmap]
rs13383860	1.00[CHB][hapmap]
rs1394796	1.00[CHB][hapmap]
rs1394797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1394799	1.00[CHB][hapmap]
rs16848495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16848505	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16848530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16848550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16848556	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs16848564	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs16848593	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs16848675	1.00[CEU][hapmap]
rs16848730	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs6435700	1.00[CHB][hapmap]
rs73062317	1.00[EUR][1000 genomes]
rs7569142	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003694	chr2:213216431-213290523	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2763101	chr2:213248318-213290535	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213285400-213288200	Enhancers	NHDF-Ad	bronchial
2	chr2:213286400-213290400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:213287000-213288200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr2:213287000-213293400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:213287600-213288400	Enhancers	Brain Hippocampus Middle	brain
6	chr2:213287800-213288200	Enhancers	Brain Anterior Caudate	brain

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