Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10168850	1.00[JPT][hapmap]
rs10178687	1.00[JPT][hapmap]
rs10180614	1.00[JPT][hapmap]
rs10194811	1.00[JPT][hapmap]
rs10197535	0.88[CEU][hapmap]
rs11675580	1.00[JPT][hapmap]
rs11892049	1.00[JPT][hapmap]
rs13015808	1.00[JPT][hapmap]
rs13021394	1.00[JPT][hapmap]
rs13021610	1.00[JPT][hapmap]
rs13389790	0.90[CHD][hapmap]
rs13413590	0.96[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1384291	1.00[JPT][hapmap]
rs1394796	1.00[CHB][hapmap]
rs1394797	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs1505372	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs16848495	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs16848525	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16848530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16848550	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16848553	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16848556	1.00[JPT][hapmap]
rs16848564	1.00[JPT][hapmap]
rs16848593	1.00[JPT][hapmap]
rs16848675	1.00[JPT][hapmap]
rs17259208	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs17325821	1.00[JPT][hapmap]
rs17329875	1.00[JPT][hapmap]
rs2062930	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs6752299	1.00[JPT][hapmap]
rs6757140	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs9283525	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213290800-213294600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:213290800-213297000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213291200-213294800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:213291400-213294600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:213291600-213294600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:213292400-213294600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:213293400-213294600	Enhancers	Brain Angular Gyrus	brain
8	chr2:213293600-213294800	Enhancers	Brain Germinal Matrix	brain
9	chr2:213293800-213294600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:213293800-213294600	Enhancers	Fetal Heart	heart
11	chr2:213294000-213294600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:213294000-213294600	Enhancers	Brain Anterior Caudate	brain

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