Variant report

Variant	rs13021394
Chromosome Location	chr2:213459426-213459427
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213457818..213459698-chr2:214016202..214018755,2	MCF-7	breast:
2	chr2:213457758..213459954-chr2:213549287..213551027,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000030419	Chromatin interaction
ENSG00000270659	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10168850	1.00[JPT][hapmap]
rs10178687	1.00[JPT][hapmap]
rs10180614	1.00[JPT][hapmap]
rs10194811	1.00[JPT][hapmap]
rs11675580	1.00[JPT][hapmap]
rs11676119	0.92[ASN][1000 genomes]
rs11678993	0.92[ASN][1000 genomes]
rs11679805	0.85[ASN][1000 genomes]
rs11682441	1.00[ASN][1000 genomes]
rs11683491	1.00[ASN][1000 genomes]
rs11685022	1.00[ASN][1000 genomes]
rs11688167	1.00[ASN][1000 genomes]
rs11693009	1.00[ASN][1000 genomes]
rs11693575	1.00[ASN][1000 genomes]
rs11892049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894305	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13000533	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13015808	1.00[JPT][hapmap]
rs13021610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410624	0.85[ASN][1000 genomes]
rs1384291	1.00[JPT][hapmap]
rs1505372	1.00[JPT][hapmap]
rs16848530	1.00[JPT][hapmap]
rs16848550	1.00[JPT][hapmap]
rs16848553	1.00[JPT][hapmap]
rs16848556	1.00[JPT][hapmap]
rs16848564	1.00[JPT][hapmap]
rs16848593	1.00[JPT][hapmap]
rs16848675	1.00[JPT][hapmap]
rs17259208	1.00[JPT][hapmap]
rs17264055	0.89[EUR][1000 genomes]
rs17264097	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17271707	1.00[ASN][1000 genomes]
rs17272024	1.00[ASN][1000 genomes]
rs17325821	1.00[JPT][hapmap]
rs17329875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330768	1.00[ASN][1000 genomes]
rs17331220	1.00[ASN][1000 genomes]
rs2062930	1.00[JPT][hapmap]
rs34071063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34446807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34741122	1.00[ASN][1000 genomes]
rs34804588	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35119835	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35521899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36042629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36125860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57917865	0.85[ASN][1000 genomes]
rs59370887	1.00[ASN][1000 genomes]
rs60327012	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61521361	0.85[ASN][1000 genomes]
rs62186337	1.00[ASN][1000 genomes]
rs62187960	1.00[ASN][1000 genomes]
rs66535530	1.00[ASN][1000 genomes]
rs6742665	0.92[ASN][1000 genomes]
rs6742793	1.00[ASN][1000 genomes]
rs67447343	0.85[ASN][1000 genomes]
rs6745180	1.00[ASN][1000 genomes]
rs71426309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71426310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933016	1.00[ASN][1000 genomes]
rs72937329	0.85[ASN][1000 genomes]
rs72937330	1.00[ASN][1000 genomes]
rs72937331	1.00[ASN][1000 genomes]
rs72937333	1.00[ASN][1000 genomes]
rs72937335	1.00[ASN][1000 genomes]
rs72937340	1.00[ASN][1000 genomes]
rs72937345	1.00[ASN][1000 genomes]
rs72937349	1.00[ASN][1000 genomes]
rs72937365	1.00[ASN][1000 genomes]
rs72937368	1.00[ASN][1000 genomes]
rs72937385	1.00[ASN][1000 genomes]
rs72949011	1.00[ASN][1000 genomes]
rs72949015	1.00[ASN][1000 genomes]
rs72949018	1.00[ASN][1000 genomes]
rs72949040	1.00[ASN][1000 genomes]
rs73987421	1.00[ASN][1000 genomes]
rs7569142	1.00[JPT][hapmap]
rs9283525	1.00[JPT][hapmap]
rs931215	1.00[ASN][1000 genomes]
rs931217	1.00[ASN][1000 genomes]
rs931218	1.00[ASN][1000 genomes]
rs956558	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213457800-213461400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:213458000-213460800	Weak transcription	HMEC	breast
3	chr2:213458000-213462600	Weak transcription	NHEK	skin

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