Variant report

Variant	rs11679805
Chromosome Location	chr2:213494947-213494948
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213489595..213491555-chr2:213494161..213496417,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10168850	1.00[JPT][hapmap]
rs10174150	0.91[EUR][1000 genomes]
rs10178687	1.00[JPT][hapmap]
rs10180614	1.00[JPT][hapmap]
rs10198723	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11676391	0.92[EUR][1000 genomes]
rs11682441	0.85[ASN][1000 genomes]
rs11683491	0.85[ASN][1000 genomes]
rs11685022	0.85[ASN][1000 genomes]
rs11687307	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11688167	0.85[ASN][1000 genomes]
rs11693009	0.85[ASN][1000 genomes]
rs11693575	0.85[ASN][1000 genomes]
rs11892049	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11894305	0.85[ASN][1000 genomes]
rs11894309	0.85[ASN][1000 genomes]
rs13000533	0.85[ASN][1000 genomes]
rs13021394	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs13021610	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs13027061	0.85[ASN][1000 genomes]
rs13395632	0.87[EUR][1000 genomes]
rs13397735	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13410624	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384291	1.00[JPT][hapmap]
rs1505372	1.00[JPT][hapmap]
rs16848675	1.00[JPT][hapmap]
rs17259208	1.00[JPT][hapmap]
rs17264097	0.85[ASN][1000 genomes]
rs17271707	0.85[ASN][1000 genomes]
rs17272024	0.85[ASN][1000 genomes]
rs17325821	1.00[JPT][hapmap]
rs17329875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17330001	0.85[ASN][1000 genomes]
rs17330768	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17331220	0.85[ASN][1000 genomes]
rs2054613	0.92[EUR][1000 genomes]
rs2054615	0.92[EUR][1000 genomes]
rs2062930	1.00[JPT][hapmap]
rs2068404	0.91[EUR][1000 genomes]
rs2128324	0.90[EUR][1000 genomes]
rs34071063	0.85[ASN][1000 genomes]
rs34446807	0.85[ASN][1000 genomes]
rs34741122	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34804588	0.85[ASN][1000 genomes]
rs35119835	0.85[ASN][1000 genomes]
rs35521899	0.85[ASN][1000 genomes]
rs36042629	0.85[ASN][1000 genomes]
rs4673669	0.90[EUR][1000 genomes]
rs5000270	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57917865	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59370887	0.85[ASN][1000 genomes]
rs60327012	0.85[ASN][1000 genomes]
rs61521361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62186337	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62187960	0.85[ASN][1000 genomes]
rs62187963	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62187964	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66535530	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6706987	0.90[EUR][1000 genomes]
rs6708862	0.92[EUR][1000 genomes]
rs6711917	0.89[EUR][1000 genomes]
rs6712252	0.92[EUR][1000 genomes]
rs6731808	0.89[EUR][1000 genomes]
rs6742665	0.85[EUR][1000 genomes]
rs6742793	0.85[ASN][1000 genomes]
rs67447343	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745180	0.85[ASN][1000 genomes]
rs6749009	0.92[EUR][1000 genomes]
rs6749157	0.92[EUR][1000 genomes]
rs6752299	1.00[JPT][hapmap]
rs67535717	0.91[EUR][1000 genomes]
rs6761880	0.90[EUR][1000 genomes]
rs71426309	0.85[ASN][1000 genomes]
rs71426310	0.85[ASN][1000 genomes]
rs72933016	0.85[ASN][1000 genomes]
rs72937329	1.00[ASN][1000 genomes]
rs72937330	0.85[ASN][1000 genomes]
rs72937331	0.85[ASN][1000 genomes]
rs72937333	0.85[ASN][1000 genomes]
rs72937335	0.85[ASN][1000 genomes]
rs72937340	0.85[ASN][1000 genomes]
rs72937345	0.85[ASN][1000 genomes]
rs72937349	0.85[ASN][1000 genomes]
rs72937365	0.85[ASN][1000 genomes]
rs72937368	0.85[ASN][1000 genomes]
rs72937385	0.85[ASN][1000 genomes]
rs72949011	0.85[ASN][1000 genomes]
rs72949015	0.85[ASN][1000 genomes]
rs72949018	0.85[ASN][1000 genomes]
rs72949040	0.85[ASN][1000 genomes]
rs73987421	0.85[ASN][1000 genomes]
rs7580653	0.88[EUR][1000 genomes]
rs7583787	0.89[EUR][1000 genomes]
rs7585465	0.89[EUR][1000 genomes]
rs7590349	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7598633	0.89[EUR][1000 genomes]
rs7601545	0.92[EUR][1000 genomes]
rs7606156	0.91[EUR][1000 genomes]
rs9283525	1.00[JPT][hapmap]
rs9288455	0.90[EUR][1000 genomes]
rs931215	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs931217	0.85[ASN][1000 genomes]
rs931218	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs956558	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875813	chr2:213480637-213509809	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213485400-213504800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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