Variant report

Variant	rs11687307
Chromosome Location	chr2:213505246-213505247
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10198723	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11678993	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11679805	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11896992	0.82[EUR][1000 genomes]
rs13386921	0.86[EUR][1000 genomes]
rs13397735	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410624	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1600883	0.83[EUR][1000 genomes]
rs1600884	0.84[EUR][1000 genomes]
rs17272024	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2220026	0.85[EUR][1000 genomes]
rs4673674	0.84[EUR][1000 genomes]
rs5000270	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57917865	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58184703	0.84[EUR][1000 genomes]
rs61521361	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62187960	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62187963	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62187964	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62187967	0.85[EUR][1000 genomes]
rs62187968	0.85[EUR][1000 genomes]
rs6435715	0.84[EUR][1000 genomes]
rs6742665	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6742793	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6743091	0.86[EUR][1000 genomes]
rs67447343	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6745180	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6750857	0.83[EUR][1000 genomes]
rs72937329	0.93[ASN][1000 genomes]
rs7572637	0.86[EUR][1000 genomes]
rs7587236	0.86[EUR][1000 genomes]
rs7590349	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7590700	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875813	chr2:213480637-213509809	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213504600-213505800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:213504600-213505800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213504800-213505800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:213504800-213505800	Enhancers	HMEC	breast
5	chr2:213504800-213505800	Enhancers	NHEK	skin

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