Variant report

Variant	rs62187960
Chromosome Location	chr2:213501008-213501009
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10198723	0.84[EUR][1000 genomes]
rs11676119	0.92[ASN][1000 genomes]
rs11678993	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11679805	0.85[ASN][1000 genomes]
rs11682441	1.00[ASN][1000 genomes]
rs11683491	1.00[ASN][1000 genomes]
rs11685022	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687307	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11688167	1.00[ASN][1000 genomes]
rs11693009	1.00[ASN][1000 genomes]
rs11693575	1.00[ASN][1000 genomes]
rs11892049	1.00[ASN][1000 genomes]
rs11894305	1.00[ASN][1000 genomes]
rs11894309	1.00[ASN][1000 genomes]
rs13000533	1.00[ASN][1000 genomes]
rs13021394	1.00[ASN][1000 genomes]
rs13021610	1.00[ASN][1000 genomes]
rs13027061	1.00[ASN][1000 genomes]
rs13397735	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13410624	0.85[ASN][1000 genomes]
rs1384297	0.85[EUR][1000 genomes]
rs17264097	1.00[ASN][1000 genomes]
rs17271707	1.00[ASN][1000 genomes]
rs17272024	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17329875	1.00[ASN][1000 genomes]
rs17330001	1.00[ASN][1000 genomes]
rs17330768	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17331220	1.00[ASN][1000 genomes]
rs34071063	1.00[ASN][1000 genomes]
rs34446807	1.00[ASN][1000 genomes]
rs34741122	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804588	1.00[ASN][1000 genomes]
rs35119835	1.00[ASN][1000 genomes]
rs35521899	1.00[ASN][1000 genomes]
rs36042629	1.00[ASN][1000 genomes]
rs36125860	0.92[ASN][1000 genomes]
rs5000270	0.84[EUR][1000 genomes]
rs57917865	0.85[ASN][1000 genomes]
rs59370887	1.00[ASN][1000 genomes]
rs60327012	1.00[ASN][1000 genomes]
rs61521361	0.85[ASN][1000 genomes]
rs62186337	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62187963	0.84[EUR][1000 genomes]
rs62187964	0.84[EUR][1000 genomes]
rs66535530	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742665	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6742793	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67447343	0.85[ASN][1000 genomes]
rs6745180	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71426309	1.00[ASN][1000 genomes]
rs71426310	1.00[ASN][1000 genomes]
rs72933016	1.00[ASN][1000 genomes]
rs72937329	0.85[ASN][1000 genomes]
rs72937330	1.00[ASN][1000 genomes]
rs72937331	1.00[ASN][1000 genomes]
rs72937333	1.00[ASN][1000 genomes]
rs72937335	1.00[ASN][1000 genomes]
rs72937340	1.00[ASN][1000 genomes]
rs72937345	1.00[ASN][1000 genomes]
rs72937349	1.00[ASN][1000 genomes]
rs72937365	1.00[ASN][1000 genomes]
rs72937368	1.00[ASN][1000 genomes]
rs72937385	1.00[ASN][1000 genomes]
rs72949011	1.00[ASN][1000 genomes]
rs72949015	1.00[ASN][1000 genomes]
rs72949018	1.00[ASN][1000 genomes]
rs72949040	1.00[ASN][1000 genomes]
rs73987421	1.00[ASN][1000 genomes]
rs7590349	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs931215	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931217	1.00[ASN][1000 genomes]
rs931218	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956558	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875813	chr2:213480637-213509809	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213485400-213504800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links